Package: gtkWidgets

Version: 0.11.0

Command: /loc/biocbuild/bbs-2.1-bioc/R/bin/R CMD check gtkWidgets_0.11.0.tar.gz

RetCode: 0

Time: 111.3 seconds

Status: OK

CheckDir: gtkWidgets.Rcheck

Warnings: 0

* checking for working latex ... OK
* using log directory '/loc/biocbuild/bbs-2.1-bioc/meat/gtkWidgets.Rcheck'
* using R version 2.6.0 Under development (unstable) (2007-06-03 r41797)
* checking for file 'gtkWidgets/DESCRIPTION' ... OK
* this is package 'gtkWidgets' version '0.11.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'gtkWidgets' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.addMenu: no visible global function definition for 'gtkMenuItem'
.addMenu: no visible global function definition for 'gtkMenu'
.applyGSubSet: no visible global function definition for 'widgetInvoke'
.applyGSubSet: no visible global function definition for 'filterfun'
.applyGSubSet: no visible global function definition for 'genefilter'
.createSubMenu: no visible global function definition for 'gtkMenuItem'
.createSubMenu: no visible global function definition for
  'gtkAddCallback'
.createSubMenu: no visible global function definition for 'gtkMenuItem'
.executeCode: no visible global function definition for 'gtkTextInsert'
.getButtonBox: no visible global function definition for 'gtkHBox'
.getButtonBox: no visible global function definition for 'gtkButton'
.getButtonBox: no visible global function definition for 'gtkButton'
.getButtonBox: no visible global function definition for 'gtkButton'
.getCheckCol: no visible global function definition for 'gtkVBoxNew'
.getCheckCol: no visible global function definition for 'gtkButton'
.getCheckCol: no visible global function definition for
  'gtkCheckButton'
.getChunkBox: no visible global function definition for 'gtkVBox'
.getChunkBox: no visible global function definition for 'gtkHBox'
.getChunkBox: no visible global function definition for 'gtkVBox'
.getChunkBox: no visible global function definition for 'gtkLabel'
.getChunkBox: no visible global function definition for 'gtkNotebook'
.getChunkBox: no visible global function definition for 'gtkLabel'
.getChunkBox: no visible global function definition for 'gtkLabel'
.getConWithVHScroll: no visible global function definition for
  'gtkList'
.getConWithVHScroll: no visible global function definition for
  'gtkText'
.getConWithVHScroll: no visible global function definition for
  'gtkVBox'
.getConWithVHScroll: no visible global function definition for
  'gtkScrolledWindow'
.getContBox: no visible global function definition for 'gtkVBox'
.getContBox: no visible global function definition for 'gtkLabel'
.getContBox: no visible global function definition for 'gtkHBox'
.getDialog : killBase: no visible global function definition for
  'gtkMainQuit'
.getDialog: no visible global function definition for 'gtkDialog'
.getDialog: no visible global function definition for 'gtkLabel'
.getDialog: no visible global function definition for 'gtkButton'
.getDialog: no visible global function definition for 'gtkButton'
.getDialog: no visible global function definition for 'gtkMain'
.getESetFrame: no visible global function definition for 'gtkFrameNew'
.getESetFrame: no visible global function definition for 'gtkLabel'
.getGeneFilterBox: no visible global function definition for
  'gtkHBoxNew'
.getGeneFilterBox: no visible global function definition for
  'gtkVBoxNew'
.getGeneFilterBox: no visible global function definition for 'gtkLabel'
.getGeneFilterBox: no visible global function definition for
  'gtkButton'
.getGeneFilterBox: no visible global function definition for
  'gtkVBoxNew'
.getGeneFilterBox: no visible global function definition for 'gtkLabel'
.getGeneFilterBox: no visible global function definition for
  'gtkButton'
.getGeneFilterBox: no visible global function definition for
  'gtkButton'
.getGeneFilterBox: no visible global function definition for
  'gtkVBoxNew'
.getGeneFilterBox: no visible global function definition for 'gtkLabel'
.getInput : killBase: no visible global function definition for
  'gtkMainQuit'
.getInput : yesClicked: no visible global function definition for
  'gtkEntryGetText'
.getInput: no visible global function definition for 'gtkDialog'
.getInput: no visible global function definition for 'gtkEntry'
.getInput: no visible global function definition for 'gtkLabel'
.getInput: no visible global function definition for 'gtkButton'
.getInput: no visible global function definition for 'gtkButton'
.getInput: no visible global function definition for 'gtkMain'
.getMenuWidget: no visible global function definition for 'gtkWindow'
.getMenuWidget: no visible global function definition for 'gtkVBox'
.getMenuWidget: no visible global function definition for 'gtkMenuBar'
.getMenuWidget: no visible global function definition for 'gtkHBoxNew'
.getOpen4ExprSet: no visible binding for global variable 'newMWidget'
.getOpen4ExprSet: no visible binding for global variable 'newMWidget'
.getQDialog : killBase: no visible global function definition for
  'gtkMainQuit'
.getQDialog: no visible global function definition for 'gtkDialog'
.getQDialog: no visible global function definition for 'gtkLabel'
.getQDialog: no visible global function definition for 'gtkButton'
.getQDialog: no visible global function definition for 'gtkButton'
.getQDialog: no visible global function definition for 'gtkMain'
.getVigBox: no visible global function definition for 'gtkHBox'
.getVigBox: no visible global function definition for 'gtkVBox'
.getVigBox: no visible global function definition for 'gtkLabel'
.getVigBox : <anonymous>: no visible binding for '<<-' assignment to
  'pkgName'
.getVigBox : <anonymous>: no visible binding for '<<-' assignment to
  'vigPath'
.getVigBox : <anonymous>: no visible binding for global variable
  'pkgName'
.getVigBox: no visible global function definition for 'gtkVBox'
.getVigBox: no visible global function definition for 'gtkLabel'
.getVigBox : <anonymous>: no visible binding for global variable
  'pkgName'
.getVigBox : <anonymous>: no visible binding for global variable
  'vigPath'
.pkgNameSelected: no visible global function definition for
  'gtkChildren'
.pkgNameSelected: no visible global function definition for
  'gtkChildren'
.pkgNameSelected: no visible global function definition for
  'gtkListItem'
.removeMenuItem: no visible global function definition for 'gtkMenu'
.setBaseBody: no visible global function definition for 'gtkVBox'
.setBaseBody: no visible global function definition for 'gtkVBox'
.setSamples: no visible global function definition for 'gtkVBoxNew'
.setSamples: no visible global function definition for 'gtkLabel'
.setSamples: no visible global function definition for 'gtkLabel'
.setSamples: no visible global function definition for 'gtkCheckButton'
.setSamples: no visible global function definition for 'gtkAddCallback'
.setSamples: no visible global function definition for 'gtkLabel'
.setSamples: no visible global function definition for
  'gtkToggleButtonNewWithLabel'
.setSamples: no visible global function definition for 'gtkAddCallback'
.setVarCombo: no visible global function definition for 'gtkLabel'
.setVarCombo: no visible global function definition for 'gtkCombo'
.setViewItems: no visible binding for global variable 'bicmwidget'
.showCode: no visible global function definition for 'gtkTextInsert'
.showMatrix: no visible global function definition for
  'gtkCListNewWithTitles'
.showMatrix: no visible global function definition for 'gtkCListAppend'
.showMatrix: no visible global function definition for 'gtkLabel'
.showText: no visible global function definition for 'gtkLabel'
.showText: no visible global function definition for 'gtkLabel'
.viewPDF : killBase: no visible global function definition for
  'gtkMainQuit'
.viewPDF: no visible global function definition for 'gtkDialog'
.viewPDF: no visible global function definition for 'gtkLabel'
.viewPDF: no visible global function definition for 'gtkButton'
.viewPDF: no visible binding for global variable 'no'
.viewPDF: no visible global function definition for 'gtkMain'
.viewVignette: no visible global function definition for 'gtkWindow'
.viewVignette: no visible global function definition for 'gtkVBox'
.viewVignette: no visible global function definition for 'gtkLabel'
.viewVignette: no visible global function definition for 'gtkButton'
.viewVignette : <anonymous>: no visible global function definition for
  'gtkMainQuit'
.viewVignette: no visible global function definition for 'gtkMain'
.writeCodeChunk2List: no visible global function definition for
  'gtkButton'
.writeCodeChunk2List: no visible global function definition for
  'gtkLabel'
.writePkgNames2List: no visible global function definition for
  'gtkListItem'
DPExplorer : initDPExplorer: no visible global function definition for
  'gtkWindow'
DPExplorer : initDPExplorer: no visible global function definition for
  'gtkVBox'
DPExplorer : initDPExplorer: no visible global function definition for
  'gtkEntry'
DPExplorer : initDPExplorer: no visible global function definition for
  'gtkMain'
DPExplorer : write2DataList: no visible global function definition for
  'gtkListItem'
DPExplorer : getNameBox: no visible global function definition for
  'gtkHBox'
DPExplorer : getNameBox: no visible global function definition for
  'gtkLabel'
DPExplorer : getNameBox: no visible global function definition for
  'gtkEntry'
DPExplorer : getNameBox: no visible global function definition for
  'gtkButton'
DPExplorer : getDataBox: no visible global function definition for
  'gtkHBox'
DPExplorer : getDataListBox: no visible global function definition for
  'gtkVBox'
DPExplorer : getDataListBox: no visible global function definition for
  'gtkLabel'
DPExplorer : getContentListBox: no visible global function definition
  for 'gtkVBox'
DPExplorer : getContentListBox: no visible global function definition
  for 'gtkLabel'
DPExplorer : getSelectionBox: no visible global function definition for
  'gtkVBox'
DPExplorer : getSelectionBox: no visible global function definition for
  'gtkLabel'
DPExplorer : getSelectionBox: no visible global function definition for
  'gtkButton'
DPExplorer : getSelectionBox : <anonymous>: no visible global function
  definition for 'gtkListItem'
DPExplorer : getSelectionBox: no visible global function definition for
  'gtkButton'
DPExplorer : getSelectionBox : <anonymous>: no visible global function
  definition for 'gtkListItem'
DPExplorer : getSelectionBox: no visible global function definition for
  'gtkButton'
DPExplorer : getSelectionBox: no visible binding for '<<-' assignment
  to 'selected'
DPExplorer : getSortButBox: no visible global function definition for
  'gtkHBox'
DPExplorer : getSortButBox: no visible global function definition for
  'gtkHBox'
DPExplorer : getSortButBox: no visible global function definition for
  'gtkLabel'
DPExplorer : getSortButBox: no visible global function definition for
  'gtkCombo'
DPExplorer : getSortButBox: no visible global function definition for
  'gtkButton'
DPExplorer : getSortButBox: no visible global function definition for
  'gtkHBox'
DPExplorer : getSortButBox: no visible global function definition for
  'gtkLabel'
DPExplorer : getSortButBox: no visible global function definition for
  'gtkCombo'
DPExplorer : getSortButBox: no visible global function definition for
  'gtkLabel'
DPExplorer : getSortButBox: no visible global function definition for
  'gtkEntry'
DPExplorer : getSortButBox: no visible global function definition for
  'gtkButton'
DPExplorer : getButBox: no visible global function definition for
  'gtkButton'
DPExplorer : getButBox : <anonymous>: no visible global function
  definition for 'gtkMainQuit'
DPExplorer : loadDataPkg: no visible global function definition for
  'gtkDialog'
DPExplorer : loadDataPkg: no visible global function definition for
  'gtkLabel'
DPExplorer : loadDataPkg: no visible global function definition for
  'gtkButton'
edgeTrimmer: no visible global function definition for 'edgeWeights'
edgeTrimmer: no visible global function definition for 'agopen'
edgeTrimmer: no visible global function definition for 'AgEdge'
edgeTrimmer: no visible global function definition for 'edgeNames'
edgeTrimmer: no visible global function definition for 'gtkWindow'
edgeTrimmer: no visible global function definition for 'gtkHBox'
edgeTrimmer: no visible global function definition for 'gtkDrawingArea'
edgeTrimmer: no visible global function definition for 'asGtkDevice'
edgeTrimmer: no visible global function definition for 'gtkVBox'
edgeTrimmer: no visible global function definition for 'gtkFrame'
edgeTrimmer: no visible global function definition for 'gtkVBox'
edgeTrimmer: no visible global function definition for 'gtkLabel'
edgeTrimmer: no visible global function definition for 'nodes'
edgeTrimmer: no visible global function definition for 'gtkLabel'
edgeTrimmer: no visible global function definition for 'gtkLabel'
edgeTrimmer: no visible global function definition for 'gtkVBox'
edgeTrimmer: no visible global function definition for 'gtkLabel'
edgeTrimmer: no visible global function definition for 'gtkAdjustment'
edgeTrimmer: no visible global function definition for 'gtkHScale'
edgeTrimmer: no visible global function definition for 'gtkButton'
getCListWithVHScroll: no visible global function definition for
  'gtkCList'
getCListWithVHScroll: no visible global function definition for
  'gtkCList'
getCListWithVHScroll: no visible global function definition for
  'gtkScrolledWindow'
getConWithVHScroll: no visible global function definition for 'gtkList'
getConWithVHScroll: no visible global function definition for 'gtkText'
getConWithVHScroll: no visible global function definition for 'gtkVBox'
getConWithVHScroll: no visible global function definition for 'gtkHBox'
getConWithVHScroll: no visible global function definition for
  'gtkScrolledWindow'
objectBrowser : initOB : close: no visible global function definition
  for 'gtkMainQuit'
objectBrowser : initOB : end: no visible global function definition for
  'gtkDialog'
objectBrowser : initOB : end: no visible global function definition for
  'gtkLabel'
objectBrowser : initOB : end: no visible global function definition for
  'gtkButton'
objectBrowser : initOB: no visible global function definition for
  'gtkWindow'
objectBrowser : initOB: no visible global function definition for
  'gtkWindowSetModal'
objectBrowser : initOB: no visible global function definition for
  'gtkVBox'
objectBrowser : initOB: no visible global function definition for
  'gtkLabel'
objectBrowser : initOB: no visible global function definition for
  'gtkHBox'
objectBrowser : initOB: no visible global function definition for
  'gtkButton'
objectBrowser : initOB: no visible global function definition for
  'gtkButton'
objectBrowser : initOB: no visible global function definition for
  'gtkMain'
objectBrowser : getObjBox: no visible global function definition for
  'gtkHBox'
objectBrowser : getObjBox: no visible global function definition for
  'gtkVBox'
objectBrowser : getObjBox: no visible global function definition for
  'gtkLabel'
objectBrowser : getObjBox: no visible global function definition for
  'gtkButton'
objectBrowser : getObjBox: no visible global function definition for
  'gtkButton'
objectBrowser : getObjBox: no visible global function definition for
  'gtkVBox'
objectBrowser : getObjBox: no visible global function definition for
  'gtkLabel'
objectBrowser : getObjBox: no visible global function definition for
  'gtkButton'
objectBrowser : getObjBox: no visible global function definition for
  'gtkButton'
objectBrowser : goin: no visible global function definition for
  'tkcurselection'
objectBrowser : goin: no visible binding for global variable 'listView'
objectBrowser : goin: no visible binding for global variable
  'selectedObj'
objectBrowser : goin: no visible binding for global variable
  'selectedObj'
subExprSet : <anonymous>: no visible global function definition for
  'gtkMainQuit'
subExprSet: no visible global function definition for 'gtkMain'
vExplorer: no visible global function definition for 'gtkWindow'
vExplorer: no visible global function definition for 'gtkVBox'
vExplorer: no visible global function definition for 'gtkHBox'
vExplorer: no visible global function definition for 'gtkLabel'
vExplorer: no visible global function definition for 'gtkButton'
vExplorer: no visible global function definition for 'gtkLabel'
write2List: no visible global function definition for 'gtkListItem'
write2Text: no visible global function definition for 'gtkTextInsert'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating gtkWidgets-Ex.R ... OK
* checking examples ... OK
* creating gtkWidgets-manual.tex ... OK
* checking gtkWidgets-manual.tex ... OK

* Installing *source* package 'gtkWidgets' ...
** R
** inst
** preparing package for lazy loading
Loading required package: DynDoc
** help
 >>> Building/Updating help pages for package 'gtkWidgets'
     Formats: text html latex example 
  DPExplorer                        text    html    latex   example
  bioCMenu-class                    text    html    latex   example
  edgeTrimmer                       text    html    latex   example
  getCListWithVHScroll              text    html    latex   example
  menuItem-class                    text    html    latex   example
  objectBrowser                     text    html    latex   example
  subExprSet                        text    html    latex   example
  vExplorer                         text    html    latex   example
** building package indices ...
* DONE (gtkWidgets)