Package: goTools

Version: 1.9.0

Command: D:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD build goTools

RetCode: 1

Time: 96.5 seconds

Status: ERROR

PackageFile: None

* checking for file 'goTools/DESCRIPTION' ... OK
* preparing 'goTools':
* checking DESCRIPTION meta-information ... OK
* checking whether 'INDEX' is up-to-date ... NO
* use '--force' to overwrite the existing 'INDEX'
* installing the package to re-build vignettes
installing R.css in D:/biocbld/bbs-2.1-bioc/tmpdir/Rinst680407241


---------- Making package goTools ------------
  adding build stamp to DESCRIPTION
  installing R files
  preparing package goTools for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: annotate
Loading required package: AnnotationDbi
Loading required package: DBI
Loading required package: RSQLite
Loading required package: GO
  installing inst files
  installing data files
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'goTools'
     Formats: text html latex example chm 
  EndNodeList                       text    html    latex   example chm
  goTools-internal                  text    html    latex           chm
  ontoCompare                       text    html    latex   example chm
  probeID                           text    html    latex           chm
Microsoft HTML Help Compiler 4.74.8702



Compiling d:\biocbld\bbs-2.1-bioc\meat\goTools\chm\goTools.chm





Compile time: 0 minutes, 0 seconds

5	Topics

26	Local links

0	Internet links

1	Graphic





Created d:\biocbld\bbs-2.1-bioc\meat\goTools\chm\goTools.chm, 19,972 bytes

Compression increased file by 1,126 bytes.

  adding MD5 sums

* DONE (goTools)
* creating vignettes ... ERROR
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: annotate
Loading required package: AnnotationDbi
Loading required package: DBI
Loading required package: RSQLite
Loading required package: GO

Attaching package: 'goTools'


	The following object(s) are masked from package:annotate :

	 getGOTerm 


Error: processing vignette 'goTools.Rnw' failed with diagnostics:
 chunk 5 
Error in file(file, "r") : unable to open connection
In addition: Warning message:
In file(file, "r") : unable to connect to 'arrays.ucsf.edu' on port 80.
Execution halted