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NOTES: (1) a maintainance reboot of lemming prevented these builds to complete on this machine (2) these are the last builds with R 2.6.0 (2007-06-03 r41797) on lamb1 and lemming, next builds will be with R 2.6.0 (2007-06-10 r41908) configured with --enable-strict-barrier
Package 80/238HostnameOSArchBUILDCHECKBUILD BIN

geneplotter

1.15.1

Biocore Team
Last Changed Date: 2007-05-11 21:56:41 -0700
Last Changed Rev: 24616
lamb1 Linux (SUSE 10.1) x86_64  OK  OK 
wellington Linux (SUSE 9.2) i686  OK  OK 
churchill Solaris 2.9 sparc  OK [ OK ]
lemming Windows Server 2003 (32-bit) x64  OK  OK skipped
Package: geneplotter
Version: 1.15.1
Command: /loc/biocbuild/bbs-2.1-bioc/R/bin/R CMD check geneplotter_1.15.1.tar.gz
RetCode: 0
Time: 287.2 seconds
Status: OK
CheckDir: geneplotter.Rcheck
Warnings: 0

Command output

* checking for working latex ... OK
* using log directory '/loc/biocbuild/bbs-2.1-bioc/meat/geneplotter.Rcheck'
* using R version 2.6.0 Under development (unstable) (2007-06-03 r41797)
* checking for file 'geneplotter/DESCRIPTION' ... OK
* this is package 'geneplotter' version '1.15.1'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'geneplotter' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
plotExpressionGraph: no visible binding for global variable 'IMCAGraph'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating geneplotter-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating geneplotter-manual.tex ... OK
* checking geneplotter-manual.tex ... OK

geneplotter.Rcheck/00install.out:

* Installing *source* package 'geneplotter' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: annotate
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: AnnotationDbi
Loading required package: DBI
Loading required package: RSQLite
Loading required package: lattice
KernSmooth 2.22 installed
Copyright M. P. Wand 1997
** help
 >>> Building/Updating help pages for package 'geneplotter'
     Formats: text html latex example 
  GetColor                          text    html    latex   example
  Makesense                         text    html    latex   example
  alongChrom                        text    html    latex   example
  amplicon.plot                     text    html    latex   example
  cColor                            text    html    latex   example
  cPlot                             text    html    latex   example
  cScale                            text    html    latex   example
  classes                           text    html    latex
  eset133a                          text    html    latex   example
  histStack                         text    html    latex   example
  identifyLines                     text    html    latex   example
  imageMap                          text    html    latex   example
  make.chromOrd                     text    html    latex   example
  multiecdf                         text    html    latex   example
  openHtmlPage                      text    html    latex   example
  panel.smoothScatter               text    html    latex   example
  plotChr                           text    html    latex   example
  plotExpressionGraph               text    html    latex   example
  savepng                           text    html    latex   example
  smoothscatter                     text    html    latex   example
** building package indices ...
* DONE (geneplotter)