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NOTES: (1) a maintainance reboot of lemming prevented these builds to complete on this machine (2) these are the last builds with R 2.6.0 (2007-06-03 r41797) on lamb1 and lemming, next builds will be with R 2.6.0 (2007-06-10 r41908) configured with --enable-strict-barrier
Package 14/238HostnameOSArchBUILDCHECKBUILD BIN

altcdfenvs

1.11.0

Laurent Gautier
Last Changed Date: 2007-05-11 21:56:41 -0700
Last Changed Rev: 24616
lamb1 Linux (SUSE 10.1) x86_64  OK  OK 
wellington Linux (SUSE 9.2) i686  OK  OK 
churchill Solaris 2.9 sparc  ERROR skipped
lemming Windows Server 2003 (32-bit) x64 [ OK ] OK skipped
Package: altcdfenvs
Version: 1.11.0
Command: D:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD build altcdfenvs
RetCode: 0
Time: 147.7 seconds
Status: OK
PackageFile: altcdfenvs_1.11.0.tar.gz

Command output

* checking for file 'altcdfenvs/DESCRIPTION' ... OK
* preparing 'altcdfenvs':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
installing R.css in D:/biocbld/bbs-2.1-bioc/tmpdir/Rinst672819842


---------- Making package altcdfenvs ------------
  adding build stamp to DESCRIPTION
  installing R files
  preparing package altcdfenvs for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: affy
Loading required package: affyio
Loading required package: preprocessCore
Loading required package: matchprobes
Loading required package: makecdfenv
Creating a new generic function for "plot" in "altcdfenvs"
  installing inst files
  installing data files
  installing man source files
  installing indices
  not zipping data
  installing help
Note: unmatched right brace in 'cdfenvEx' on or after line 21
Note: unmatched right brace in 'cdfenvEx.Rd' on or after line 21
 >>> Building/Updating help pages for package 'altcdfenvs'
     Formats: text html latex example chm 
  CdfEnvAffy-class                  text    html    latex   example chm
  appendCdfEnvAffy                  text    html    latex   example chm
  cdfenv                            text    html    latex   example chm
  cdfenvEx                          text    html    latex   example chm
  copyCdfEnvAffy                    text    html    latex           chm
  countduplicated                   text    html    latex   example chm
  geneNames                         text    html    latex           chm
  getxy.probeseq                    text    html    latex   example chm
  index2xy                          text    html    latex   example chm
  indexProbes.CdfEnvAffy            text    html    latex   example chm
  plot.CdfEnvAffy                   text    html    latex   example chm
  removeIndex                       text    html    latex   example chm
  unique.CdfEnvAffy                 text    html    latex   example chm
  utils.FASTA                       text    html    latex   example chm
  validAffyBatch                    text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702



Compiling d:\biocbld\bbs-2.1-bioc\meat\altcdfenvs\chm\altcdfenvs.chm





Compile time: 0 minutes, 0 seconds

16	Topics

66	Local links

0	Internet links

1	Graphic





Created d:\biocbld\bbs-2.1-bioc\meat\altcdfenvs\chm\altcdfenvs.chm, 31,843 bytes

Compression decreased file by 25,248 bytes.

  adding MD5 sums

* DONE (altcdfenvs)
* creating vignettes ... OK
* removing junk files
* checking for LF line-endings in source files
* checking for empty or unneeded directories
* building 'altcdfenvs_1.11.0.tar.gz'