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NOTES: (1) a maintainance reboot of lemming prevented these builds to complete on this machine (2) these are the last builds with R 2.6.0 (2007-06-03 r41797) on lamb1 and lemming, next builds will be with R 2.6.0 (2007-06-10 r41908) configured with --enable-strict-barrier
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SNPchip

1.1.0

Robert Scharpf
Last Changed Date: 2007-05-11 21:56:41 -0700
Last Changed Rev: 24616
lamb1 Linux (SUSE 10.1) x86_64 [ OK ] OK 
wellington Linux (SUSE 9.2) i686  OK  OK 
churchill Solaris 2.9 sparc  OK  OK 
lemming Windows Server 2003 (32-bit) x64  OK skippedskipped
Package: SNPchip
Version: 1.1.0
Command: /home/biocbuild/bbs-2.1-bioc/R/bin/R CMD build SNPchip
RetCode: 0
Time: 17.5 seconds
Status: OK
PackageFile: SNPchip_1.1.0.tar.gz

Command output

* checking for file 'SNPchip/DESCRIPTION' ... OK
* preparing 'SNPchip':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* Installing *source* package 'SNPchip' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: geneplotter
Loading required package: annotate
Loading required package: AnnotationDbi
Loading required package: DBI
Loading required package: RSQLite
Loading required package: lattice
KernSmooth 2.22 installed
Copyright M. P. Wand 1997
Loading required package: oligo
Loading required package: affyio
Loading required package: splines
Loading required package: BufferedMatrix
Loading required package: BufferedMatrixMethods
Loading required package: preprocessCore
This is the oligo package
** help
Note: unmatched right brace in 'AnnotatedSnpSet-class' on or after line 89
Note: unmatched right brace in 'chromosome' on or after line 14
Note: unmatched right brace in 'plotSnp' on or after line 85
 >>> Building/Updating help pages for package 'SNPchip'
     Formats: text html latex example 
  AnnotatedSnpCallSet-class         text    html    latex   example
  AnnotatedSnpCopyNumberSet-class   text    html    latex   example
  AnnotatedSnpSet-class             text    html    latex   example
  addFeatureData-method             text    html    latex
  alleleA                           text    html    latex   example
  alleleB                           text    html    latex   example
  annSnpset                         text    html    latex   example
  centromere                        text    html    latex   example
  chromosome                        text    html    latex
  chromosomeAnnotation              text    html    latex   example
  chromosomeSize                    text    html    latex   example
  coerce-methods                    text    html    latex
  copyNumber                        text    html    latex
  cytoband                          text    html    latex   example
  dbSnpId                           text    html    latex   example
  enzyme                            text    html    latex   example
  fData                             text    html    latex   example
  fragmentLength                    text    html    latex   example
  getSnpAnnotation                  text    html    latex   example
  hapmap                            text    html    latex   example
  initialize-methods                text    html    latex
  plotCytoband                      text    html    latex   example
  plotSnp                           text    html    latex   example
  position                          text    html    latex
  show-methods                      text    html    latex
  showSummary                       text    html    latex   example
  smoothSnp                         text    html    latex   example
  summary-methods                   text    html    latex
  unsplitS4                         text    html    latex   example
** building package indices ...
* DONE (SNPchip)
* creating vignettes ... OK
* removing junk files
* checking for LF line-endings in source files
* checking for empty or unneeded directories
* building 'SNPchip_1.1.0.tar.gz'