BioC 2.1: CHECK report for GeneMeta on lemming

* checking for working latex ... OK
* using log directory 'D:/biocbld/bbs-2.1-bioc/meat/GeneMeta.Rcheck'
* using R version 2.6.0 Under development (unstable) (2007-06-03 r41797)
* checking for file 'GeneMeta/DESCRIPTION' ... OK
* this is package 'GeneMeta' version '1.9.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'GeneMeta' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating GeneMeta-Ex.R ... OK
* checking examples ... ERROR
Running examples in 'GeneMeta-Ex.R' failed.
The error most likely occurred in:

> ### * zscore
> 
> flush(stderr()); flush(stdout())
> 
> ### Name: zScores
> ### Title: Tools for Meta-analysis of gene expression data.
> ### Aliases: zScores multExpFDR zScoreFDR zScorePermuted
> ### Keywords: manip
> 
> ### ** Examples
> 
> data(Nevins)
> ##Splitting 
> thestatus  <- Nevins$ER.status
> group1     <- which(thestatus=="pos")
> group2     <- which(thestatus=="neg")
> rrr        <- c(sample(group1, floor(length(group1)/2)),
+                 sample(group2,ceiling(length(group2)/2)))
Error in sample(group1, floor(length(group1)/2)) : invalid 'x' argument
Execution halted

installing R.css in D:/biocbld/bbs-2.1-bioc/meat/GeneMeta.Rcheck


---------- Making package GeneMeta ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  installing R files
  preparing package GeneMeta for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: genefilter
Loading required package: survival
Loading required package: splines
  installing inst files
  installing data files
  installing man source files
  installing indices
  not zipping data
  installing help
Note: unmatched right brace in 'tau' on or after line 9
Note: unmatched right brace in 'tau.Rd' on or after line 9
 >>> Building/Updating help pages for package 'GeneMeta'
     Formats: text html latex example chm 
  CountPlot                         text    html    latex   example chm
  Nevins                            text    html    latex   example chm
  dstar                             text    html    latex   example chm
  f.Q                               text    html    latex   example chm
  tau                               text    html    latex   example chm
  zscore                            text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling d:\biocbld\bbs-2.1-bioc\meat\GeneMeta.Rcheck\00_pkg_src\GeneMeta\chm\GeneMeta.chm


Compile time: 0 minutes, 0 seconds
7	Topics
27	Local links
1	Internet link
1	Graphic


Created d:\biocbld\bbs-2.1-bioc\meat\GeneMeta.Rcheck\00_pkg_src\GeneMeta\chm\GeneMeta.chm, 25,289 bytes
Compression decreased file by 2,840 bytes.
  adding MD5 sums

* DONE (GeneMeta)

Package 79/238	Hostname	OS	Arch	BUILD	CHECK	BUILD BIN
GeneMeta 1.9.0 Biocore Team Last Changed Date: 2007-05-11 21:56:41 -0700 Last Changed Rev: 24616	lamb1	Linux (SUSE 10.1)	x86_64	OK	ERROR
	wellington	Linux (SUSE 9.2)	i686	OK	ERROR
	churchill	Solaris 2.9	sparc	OK	ERROR
	lemming	Windows Server 2003 (32-bit)	x64	OK	[ ERROR ]	skipped

GeneMeta

1.9.0

Command output