BioC 2.1: CHECK report for BSgenome on lemming

* checking for working latex ... OK
* using log directory 'D:/biocbld/bbs-2.1-bioc/meat/BSgenome.Rcheck'
* using R version 2.6.0 Under development (unstable) (2007-06-03 r41797)
* checking for file 'BSgenome/DESCRIPTION' ... OK
* this is package 'BSgenome' version '1.5.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'BSgenome' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating BSgenome-Ex.R ... OK
* checking examples ... OK
* creating BSgenome-manual.tex ... OK
* checking BSgenome-manual.tex ... OK

installing R.css in D:/biocbld/bbs-2.1-bioc/meat/BSgenome.Rcheck


---------- Making package BSgenome ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  installing R files
  preparing package BSgenome for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: Biostrings
Warning in namespaceImportFrom(self, asNamespace(ns)) :
  replacing previous import: split
  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'BSgenome'
     Formats: text html latex example chm 
  BSgenome-class                    text    html    latex   example chm
  available.genomes                 text    html    latex   example chm
  buildDataFiles                    text    html    latex   example chm
  getSeq                            text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling d:\biocbld\bbs-2.1-bioc\meat\BSgenome.Rcheck\00_pkg_src\BSgenome\chm\BSgenome.chm


Compile time: 0 minutes, 0 seconds
5	Topics
32	Local links
0	Internet links
1	Graphic


Created d:\biocbld\bbs-2.1-bioc\meat\BSgenome.Rcheck\00_pkg_src\BSgenome\chm\BSgenome.chm, 22,849 bytes
Compression decreased file by 2,425 bytes.
  adding MD5 sums

* DONE (BSgenome)

Package 39/238	Hostname	OS	Arch	BUILD	CHECK	BUILD BIN
BSgenome 1.5.0 H. Pages Last Changed Date: 2007-05-11 21:56:41 -0700 Last Changed Rev: 24616	lamb1	Linux (SUSE 10.1)	x86_64	OK	OK
	wellington	Linux (SUSE 9.2)	i686	OK	OK
	churchill	Solaris 2.9	sparc	OK	OK
	lemming	Windows Server 2003 (32-bit)	x64	OK	[ OK ]	skipped

BSgenome

1.5.0

Command output