Package: ppiStats

Version: 1.3.0

Command: D:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD check ppiStats_1.3.0.tar.gz

RetCode: 0

Time: 259.5 seconds

Status: WARNINGS

CheckDir: ppiStats.Rcheck

Warnings: 1

* checking for working latex ... OK
* using log directory 'D:/biocbld/bbs-2.1-bioc/meat/ppiStats.Rcheck'
* using R version 2.6.0 Under development (unstable) (2007-04-17 r41210)
* checking for file 'ppiStats/DESCRIPTION' ... OK
* this is package 'ppiStats' version '1.3.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'ppiStats' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating ppiStats-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... WARNING
Package vignettes without corresponding PDF:
  D:/biocbld/bbs-2.1-bioc/meat/ppiStats.Rcheck/00_pkg_src/ppiStats/inst/doc/supp.Rnw
*** Weave Errors ***
File D:/biocbld/bbs-2.1-bioc/meat/ppiStats.Rcheck/ppiStats/doc/supp.Rnw :
Error :  chunk 16 (label=showAbundance) 
Error in as.numeric(switch(which.test, large.indegree = ginfo$in.large.pval,  : 
	no applicable method for "as.double"
*** Source Errors ***
File D:/biocbld/bbs-2.1-bioc/meat/ppiStats.Rcheck/ppiStats/doc/supp.R :
Error : cannot allocate vector of size 219.3 Mb
* creating ppiStats-manual.tex ... OK
* checking ppiStats-manual.tex ... OK

WARNING: There was 1 warning, see
  D:/biocbld/bbs-2.1-bioc/meat/ppiStats.Rcheck/00check.log
for details

installing R.css in D:/biocbld/bbs-2.1-bioc/meat/ppiStats.Rcheck


---------- Making package ppiStats ------------
  adding build stamp to DESCRIPTION
  installing R files
  installing inst files
  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'ppiStats'
     Formats: text html latex example chm 
  assessSymmetry                    text    html    latex   example chm
  bpMatrix                          text    html    latex   example chm
  calcInOutDegStats                 text    html    latex   example chm
  estErrProbMethodOfMoments         text    html    latex   example chm
  genBPGraph                        text    html    latex   example chm
  idProteinErrorType                text    html    latex   example chm
  idProteinType                     text    html    latex   example chm
  nullDistDoublyTestedEdges         text    html    latex   example chm
  twPERM                            text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling d:\biocbld\bbs-2.1-bioc\meat\ppiStats.Rcheck\00_pkg_src\ppiStats\chm\ppiStats.chm


Compile time: 0 minutes, 0 seconds
10	Topics
22	Local links
2	Internet links
1	Graphic


Created d:\biocbld\bbs-2.1-bioc\meat\ppiStats.Rcheck\00_pkg_src\ppiStats\chm\ppiStats.chm, 30,403 bytes
Compression decreased file by 6,953 bytes.
  adding MD5 sums

* DONE (ppiStats)