Package: BufferedMatrixMethods

Version: 1.1.1

Command: D:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD check BufferedMatrixMethods_1.1.1.tar.gz

RetCode: 0

Time: 33.5 seconds

Status: OK

CheckDir: BufferedMatrixMethods.Rcheck

Warnings: 0

* checking for working latex ... OK
* using log directory 'D:/biocbld/bbs-2.1-bioc/meat/BufferedMatrixMethods.Rcheck'
* using R version 2.6.0 Under development (unstable) (2007-04-17 r41210)
* checking for file 'BufferedMatrixMethods/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'BufferedMatrixMethods' version '1.1.1'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'BufferedMatrixMethods' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking for CRLF line endings in C/C++/Fortran sources/headers ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating BufferedMatrixMethods-Ex.R ... OK
* checking examples ... OK
* creating BufferedMatrixMethods-manual.tex ... OK
* checking BufferedMatrixMethods-manual.tex ... OK

installing R.css in D:/biocbld/bbs-2.1-bioc/meat/BufferedMatrixMethods.Rcheck


---------- Making package BufferedMatrixMethods ------------
  adding build stamp to DESCRIPTION
  making DLL ...
making init_package.d from init_package.c
making preprocess_bm.d from preprocess_bm.c
gcc   -Id:/biocbld/bbs-2.1-bioc/R/include -I"d:/biocbld/bbs-2.1-bioc/R/library/BufferedMatrix/include" -Wall -O3 -std=gnu99   -c init_package.c -o init_package.o
gcc   -Id:/biocbld/bbs-2.1-bioc/R/include -I"d:/biocbld/bbs-2.1-bioc/R/library/BufferedMatrix/include" -Wall -O3 -std=gnu99   -c preprocess_bm.c -o preprocess_bm.o
preprocess_bm.c: In function `bm_rma_bg_correct':
preprocess_bm.c:342: warning: unused variable `i'
preprocess_bm.c: In function `R_bm_rma_bg_correct':
preprocess_bm.c:376: warning: unused variable `current_mode'
preprocess_bm.c: In function `R_bm_quantile_normalize':
preprocess_bm.c:587: warning: unused variable `current_mode'
preprocess_bm.c: At top level:
preprocess_bm.c:451: warning: 'min' defined but not used
windres -I d:/biocbld/bbs-2.1-bioc/R/include  -i BufferedMatrixMethods_res.rc -o BufferedMatrixMethods_res.o
gcc  -shared -s  -o BufferedMatrixMethods.dll BufferedMatrixMethods.def init_package.o preprocess_bm.o BufferedMatrixMethods_res.o  -Ld:/biocbld/bbs-2.1-bioc/R/bin    -lR
  ... DLL made
  installing DLL
  installing R files
  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'BufferedMatrixMethods'
     Formats: text html latex example chm 
  rmapreprocess.bufferedmatrix      text    html    latex           chm
Microsoft HTML Help Compiler 4.74.8702

Compiling d:\biocbld\bbs-2.1-bioc\meat\BufferedMatrixMethods.Rcheck\00_pkg_src\BufferedMatrixMethods\chm\BufferedMatrixMethods.chm


Compile time: 0 minutes, 0 seconds
2	Topics
5	Local links
0	Internet links
1	Graphic


Created d:\biocbld\bbs-2.1-bioc\meat\BufferedMatrixMethods.Rcheck\00_pkg_src\BufferedMatrixMethods\chm\BufferedMatrixMethods.chm, 16,600 bytes
Compression increased file by 7,131 bytes.
  adding MD5 sums

* DONE (BufferedMatrixMethods)