Package: siggenes

Version: 1.11.0

Command: /loc/biocbuild/bbs-2.1-bioc/R/bin/R CMD check siggenes_1.11.0.tar.gz

RetCode: 0

Time: 228.8 seconds

Status: OK

CheckDir: siggenes.Rcheck

Warnings: 0

* checking for working latex ... OK
* using log directory '/extra/loc/biocbuild/bbs-2.1-bioc/meat/siggenes.Rcheck'
* using R version 2.6.0 Under development (unstable) (2007-04-17 r41210)
* checking for file 'siggenes/DESCRIPTION' ... OK
* this is package 'siggenes' version '1.11.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'siggenes' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating siggenes-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating siggenes-manual.tex ... OK
* checking siggenes-manual.tex ... OK

* Installing *source* package 'siggenes' ...
** R
** inst
** preparing package for lazy loading
Loading required package: multtest
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: survival
Loading required package: splines
Creating a new generic function for "print" in "siggenes"
Creating a new generic function for "identify" in "siggenes"
** help
 >>> Building/Updating help pages for package 'siggenes'
     Formats: text html latex example 
  EBAM-class                        text    html    latex   example
  FindA0-class                      text    html    latex
  SAM-class                         text    html    latex   example
  cat.ebam                          text    html    latex
  cat.stat                          text    html    latex
  d.stat                            text    html    latex
  delta.plot                        text    html    latex   example
  denspr                            text    html    latex
  ebam                              text    html    latex   example
  find.a0                           text    html    latex   example
  fudge2                            text    html    latex
  help.ebam                         text    html    latex   example
  help.finda0                       text    html    latex   example
  help.sam                          text    html    latex   example
  link.genes                        text    html    latex
  link.siggenes                     text    html    latex
  list.siggenes                     text    html    latex   example
  pi0.est                           text    html    latex   example
  plotArguments                     text    html    latex
  plotFindArguments                 text    html    latex
  qvalue.cal                        text    html    latex   example
  sam                               text    html    latex   example
  sam.plot2                         text    html    latex   example
  siggenes-internal                 text    html    latex
  siggenes2excel                    text    html    latex
  siggenes2html                     text    html    latex
  sumSAM-class                      text    html    latex
  wilc.ebam                         text    html    latex
  wilc.stat                         text    html    latex
  z.ebam                            text    html    latex
** building package indices ...
* DONE (siggenes)