Package: occugene

Version: 0.1.0

Command: D:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD check occugene_0.1.0.tar.gz

RetCode: 0

Time: 58.5 seconds

Status: OK

CheckDir: occugene.Rcheck

Warnings: 0

* checking for working latex ... OK
* using log directory 'D:/biocbld/bbs-2.1-bioc/meat/occugene.Rcheck'
* using R version 2.6.0 Under development (unstable) (2007-04-17 r41210)
* checking for file 'occugene/DESCRIPTION' ... OK
* this is package 'occugene' version '0.1.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'occugene' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating occugene-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating occugene-manual.tex ... OK
* checking occugene-manual.tex ... OK

installing R.css in D:/biocbld/bbs-2.1-bioc/meat/occugene.Rcheck


---------- Making package occugene ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  installing R files
  installing inst files
  installing data files
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'occugene'
     Formats: text html latex example chm 
  binHist                           text    html    latex   example chm
  binInsert                         text    html    latex   example chm
  binInsertHist                     text    html    latex   example chm
  checkFormat                       text    html    latex   example chm
  delta0                            text    html    latex   example chm
  eMult                             text    html    latex   example chm
  etDelta                           text    html    latex   example chm
  fCumul                            text    html    latex   example chm
  fFit                              text    html    latex   example chm
  loadAnnotation                    text    html    latex   example chm
  loadInsertions                    text    html    latex   example chm
  occup2Negenes                     text    html    latex   example chm
  sampleAnnotation                  text    html    latex           chm
  sampleInsertions                  text    html    latex           chm
  unbiasB0                          text    html    latex   example chm
  unbiasDelta0                      text    html    latex   example chm
  varMult                           text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling d:\biocbld\bbs-2.1-bioc\meat\occugene.Rcheck\00_pkg_src\occugene\chm\occugene.chm


Compile time: 0 minutes, 0 seconds
18	Topics
34	Local links
0	Internet links
1	Graphic


Created d:\biocbld\bbs-2.1-bioc\meat\occugene.Rcheck\00_pkg_src\occugene\chm\occugene.chm, 26,817 bytes
Compression decreased file by 17,813 bytes.
  preparing package occugene for lazy loading
  adding MD5 sums

* DONE (occugene)