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occugene

0.1.0

Oliver Will
Last Changed Date: 2006-11-16 20:17:51 -0800
Last Changed Rev: 21166
lamb1 Linux (SUSE 10.1) x86_64  OK [ OK ]
wellington Linux (SUSE 9.2) i686  OK  OK 
churchill Solaris 2.9 sparc  OK  OK 
lemming Windows Server 2003 (32-bit) x64  OK  OK  OK 
Package: occugene
Version: 0.1.0
Command: /home/biocbuild/bbs-2.1-bioc/R/bin/R CMD check occugene_0.1.0.tar.gz
RetCode: 0
Time: 18.5 seconds
Status: OK
CheckDir: occugene.Rcheck
Warnings: 0

Command output

* checking for working latex ... OK
* using log directory '/home/biocbuild/bbs-2.1-bioc/meat/occugene.Rcheck'
* using R version 2.6.0 Under development (unstable) (2007-04-17 r41210)
* checking for file 'occugene/DESCRIPTION' ... OK
* this is package 'occugene' version '0.1.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'occugene' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating occugene-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating occugene-manual.tex ... OK
* checking occugene-manual.tex ... OK

occugene.Rcheck/00install.out:

* Installing *source* package 'occugene' ...
** R
** data
** inst
** preparing package for lazy loading
** help
 >>> Building/Updating help pages for package 'occugene'
     Formats: text html latex example 
  binHist                           text    html    latex   example
  binInsert                         text    html    latex   example
  binInsertHist                     text    html    latex   example
  checkFormat                       text    html    latex   example
  delta0                            text    html    latex   example
  eMult                             text    html    latex   example
  etDelta                           text    html    latex   example
  fCumul                            text    html    latex   example
  fFit                              text    html    latex   example
  loadAnnotation                    text    html    latex   example
  loadInsertions                    text    html    latex   example
  occup2Negenes                     text    html    latex   example
  sampleAnnotation                  text    html    latex
  sampleInsertions                  text    html    latex
  unbiasB0                          text    html    latex   example
  unbiasDelta0                      text    html    latex   example
  varMult                           text    html    latex   example
** building package indices ...
* DONE (occugene)