Package: fbat

Version: 1.1.1

Command: /loc/biocbuild/bbs-2.1-bioc/R/bin/R CMD build fbat

RetCode: 1

Time: 8.1 seconds

Status: ERROR

PackageFile: None

* checking for file 'fbat/DESCRIPTION' ... OK
* preparing 'fbat':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* Installing *source* package 'fbat' ...
** libs
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include  -I/usr/local/include    -fPIC  -g -O2 -Wall -c FBAT.c -o FBAT.o
FBAT.c: In function 'countWords':
FBAT.c:2125: warning: array subscript has type 'char'
FBAT.c:2125: warning: array subscript has type 'char'
FBAT.c:2131: warning: array subscript has type 'char'
FBAT.c: In function 'countLines':
FBAT.c:2142: warning: 'tmpnc2' may be used uninitialized in this function
FBAT.c: In function 'oneNuclearFamily':
FBAT.c:1859: warning: 'sex2' may be used uninitialized in this function
FBAT.c:1859: warning: 'sex1' may be used uninitialized in this function
FBAT.c: In function 'decomposePed':
FBAT.c:1986: warning: 'i' may be used uninitialized in this function
FBAT.c: In function 'checkoneNuclearFamily':
FBAT.c:1667: warning: 'sex2' may be used uninitialized in this function
FBAT.c:1667: warning: 'sex1' may be used uninitialized in this function
FBAT.c: In function 'checkdecomposePed':
FBAT.c:1590: warning: 'i' may be used uninitialized in this function
FBAT.c: In function 'checkCompatible':
FBAT.c:1404: warning: 'start2' may be used uninitialized in this function
FBAT.c: In function 'fbat':
FBAT.c:43: warning: 'start2' may be used uninitialized in this function
gfortran   -fPIC  -g -O2 -Wall -c missGFreq.f -o missGFreq.o
 In file missGFreq.f:25

              if( (allele1+allele2) .eq. 0) then /* genotype=00 */      
                                           1
Error: Unclassifiable statement in IF-clause at (1)
 In file missGFreq.f:38

            endif                                                       
              1
Error: Expecting END DO statement at (1)
make: *** [missGFreq.o] Error 1
ERROR: compilation failed for package 'fbat'
** Removing '/tmp/Rinst96300574/fbat'
 ERROR
Installation failed.
Removing '/tmp/Rinst96300574'