BioC 2.1: BUILD report for cosmo on lemming

* checking for file 'cosmo/DESCRIPTION' ... OK
* preparing 'cosmo':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
installing R.css in D:/biocbld/bbs-2.1-bioc/tmpdir/Rinst290033935


---------- Making package cosmo ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  making DLL ...
making alloc.d from alloc.c
making back.d from back.c
making constraints.d from constraints.c
making cosmo.d from cosmo.c
making cregistration.d from cregistration.c
making donlp2.d from donlp2.c
making estarts.d from estarts.c
making eval.d from eval.c
making fit.d from fit.c
making free.d from free.c
making init.d from init.c
making io.d from io.c
making lstarts.d from lstarts.c
making matLib.d from matLib.c
making newx.d from newx.c
making optimize.d from optimize.c
making posterior.d from posterior.c
making precalc.d from precalc.c
making rio.d from rio.c
making theta.d from theta.c
making user_eval.d from user_eval.c
making xml.d from xml.c
gcc  -IINCLUDE -Id:/biocbld/bbs-2.1-bioc/R/include  -Wall -O3 -std=gnu99   -c alloc.c -o alloc.o
gcc  -IINCLUDE -Id:/biocbld/bbs-2.1-bioc/R/include  -Wall -O3 -std=gnu99   -c back.c -o back.o
gcc  -IINCLUDE -Id:/biocbld/bbs-2.1-bioc/R/include  -Wall -O3 -std=gnu99   -c constraints.c -o constraints.o
gcc  -IINCLUDE -Id:/biocbld/bbs-2.1-bioc/R/include  -Wall -O3 -std=gnu99   -c cosmo.c -o cosmo.o
gcc  -IINCLUDE -Id:/biocbld/bbs-2.1-bioc/R/include  -Wall -O3 -std=gnu99   -c cregistration.c -o cregistration.o
gcc  -IINCLUDE -Id:/biocbld/bbs-2.1-bioc/R/include  -Wall -O3 -std=gnu99   -c donlp2.c -o donlp2.o
donlp2.c: In function `o8st':
donlp2.c:438: warning: unused variable `k'
donlp2.c:439: warning: unused variable `tol1'
donlp2.c:439: warning: unused variable `bd0'
donlp2.c:439: warning: unused variable `gxi'
donlp2.c:439: warning: unused variable `hxi'
donlp2.c:439: warning: unused variable `term'
donlp2.c: In function `o8opti':
donlp2.c:2055: warning: unused variable `l'
donlp2.c:2068: warning: unused variable `eval_err'
donlp2.c: In function `o8dird':
donlp2.c:4096: warning: unused variable `term1'
donlp2.c:4100: warning: label `L100' defined but not used
donlp2.c: In function `o8eval':
donlp2.c:4387: warning: unused variable `j'
donlp2.c: In function `o8elim':
donlp2.c:5003: warning: unused variable `l'
donlp2.c: In function `o8qpdu':
donlp2.c:5731: warning: unused variable `term2'
donlp2.c:6394: warning: label `L500' defined but not used
donlp2.c: In function `o8dlcd':
donlp2.c:7129: warning: label `L20' defined but not used
donlp2.c: In function `i1_malloc':
donlp2.c:7849: warning: unused variable `j'
donlp2.c: In function `i1_free':
donlp2.c:7886: warning: unused variable `i'
donlp2.c: In function `d1_malloc':
donlp2.c:7979: warning: unused variable `j'
donlp2.c: In function `d1_free':
donlp2.c:8014: warning: unused variable `i'
donlp2.c: In function `l1_malloc':
donlp2.c:8108: warning: unused variable `j'
donlp2.c: In function `l1_free':
donlp2.c:8143: warning: unused variable `i'
donlp2.c: At top level:
INCLUDE/o8gene.h:23: warning: 'o8fcount' defined but not used
gcc  -IINCLUDE -Id:/biocbld/bbs-2.1-bioc/R/include  -Wall -O3 -std=gnu99   -c estarts.c -o estarts.o
gcc  -IINCLUDE -Id:/biocbld/bbs-2.1-bioc/R/include  -Wall -O3 -std=gnu99   -c eval.c -o eval.o
eval.c: In function `init_llr_pv_tables':
eval.c:99: warning: unused variable `n'
gcc  -IINCLUDE -Id:/biocbld/bbs-2.1-bioc/R/include  -Wall -O3 -std=gnu99   -c fit.c -o fit.o
fit.c: In function `getCvPwmRisk':
fit.c:794: warning: 'nnSites' might be used uninitialized in this function
fit.c:795: warning: 'numSv' might be used uninitialized in this function
fit.c:804: warning: 'numSites0' might be used uninitialized in this function
gcc  -IINCLUDE -Id:/biocbld/bbs-2.1-bioc/R/include  -Wall -O3 -std=gnu99   -c free.c -o free.o
gcc  -IINCLUDE -Id:/biocbld/bbs-2.1-bioc/R/include  -Wall -O3 -std=gnu99   -c init.c -o init.o
gcc  -IINCLUDE -Id:/biocbld/bbs-2.1-bioc/R/include  -Wall -O3 -std=gnu99   -c io.c -o io.o
gcc  -IINCLUDE -Id:/biocbld/bbs-2.1-bioc/R/include  -Wall -O3 -std=gnu99   -c lstarts.c -o lstarts.o
gcc  -IINCLUDE -Id:/biocbld/bbs-2.1-bioc/R/include  -Wall -O3 -std=gnu99   -c matLib.c -o matLib.o
gcc  -IINCLUDE -Id:/biocbld/bbs-2.1-bioc/R/include  -Wall -O3 -std=gnu99   -c newx.c -o newx.o
newx.c: In function `newx':
INCLUDE/o8fuco.h:5: warning: unused variable `o8val'
INCLUDE/o8fuco.h:5: warning: unused variable `o8llow'
INCLUDE/o8fuco.h:5: warning: unused variable `o8lup'
INCLUDE/o8fuco.h:7: warning: unused variable `o8n'
INCLUDE/o8fuco.h:7: warning: unused variable `o8nr'
INCLUDE/o8fuco.h:7: warning: unused variable `o8nres'
INCLUDE/o8fuco.h:7: warning: unused variable `o8nlin'
INCLUDE/o8fuco.h:7: warning: unused variable `o8nonlin'
INCLUDE/o8fuco.h:7: warning: unused variable `o8nstep'
INCLUDE/o8fuco.h:7: warning: unused variable `o8ndualm'
INCLUDE/o8fuco.h:7: warning: unused variable `o8mdualm'
INCLUDE/o8fuco.h:9: warning: unused variable `o8epsmac'
INCLUDE/o8fuco.h:9: warning: unused variable `o8tolmac'
INCLUDE/o8fuco.h:9: warning: unused variable `o8deldif'
INCLUDE/o8fuco.h:11: warning: unused variable `o8name'
INCLUDE/o8fuco.h:13: warning: unused variable `o8epsdif'
INCLUDE/o8fuco.h:15: warning: unused variable `o8intakt'
INCLUDE/o8fuco.h:15: warning: unused variable `o8te0'
INCLUDE/o8fuco.h:15: warning: unused variable `o8te1'
INCLUDE/o8fuco.h:15: warning: unused variable `o8te2'
INCLUDE/o8fuco.h:15: warning: unused variable `o8te3'
INCLUDE/o8fuco.h:16: warning: unused variable `o8ident'
INCLUDE/o8fuco.h:16: warning: unused variable `o8eqres'
INCLUDE/o8fuco.h:16: warning: unused variable `o8silent'
INCLUDE/o8fuco.h:16: warning: unused variable `o8analyt'
INCLUDE/o8fuco.h:16: warning: unused variable `o8cold'
INCLUDE/o8fuco.h:18: warning: unused variable `o8icf'
INCLUDE/o8fuco.h:18: warning: unused variable `o8icgf'
INCLUDE/o8fuco.h:18: warning: unused variable `o8cfincr'
INCLUDE/o8fuco.h:18: warning: unused variable `o8cres'
INCLUDE/o8fuco.h:18: warning: unused variable `o8cgres'
INCLUDE/o8fuco.h:20: warning: unused variable `o8ffuerr'
INCLUDE/o8fuco.h:20: warning: unused variable `o8confuerr'
INCLUDE/o8fuco.h:25: warning: unused variable `o8nh'
INCLUDE/o8fuco.h:25: warning: unused variable `o8ng'
INCLUDE/o8fuco.h:27: warning: unused variable `o8nonlinlist'
INCLUDE/o8fuco.h:29: warning: unused variable `o8gunit'
INCLUDE/o8fuco.h:31: warning: unused variable `o8gconst'
INCLUDE/o8fuco.h:33: warning: unused variable `o8cfuerr'
gcc  -IINCLUDE -Id:/biocbld/bbs-2.1-bioc/R/include  -Wall -O3 -std=gnu99   -c optimize.c -o optimize.o
optimize.c: In function `user_init_size':
INCLUDE/o8fuco.h:5: warning: unused variable `o8val'
INCLUDE/o8fuco.h:5: warning: unused variable `o8llow'
INCLUDE/o8fuco.h:5: warning: unused variable `o8lup'
INCLUDE/o8fuco.h:7: warning: unused variable `o8nr'
INCLUDE/o8fuco.h:7: warning: unused variable `o8nres'
INCLUDE/o8fuco.h:7: warning: unused variable `o8ndualm'
INCLUDE/o8fuco.h:7: warning: unused variable `o8mdualm'
INCLUDE/o8fuco.h:9: warning: unused variable `o8epsmac'
INCLUDE/o8fuco.h:9: warning: unused variable `o8tolmac'
INCLUDE/o8fuco.h:9: warning: unused variable `o8deldif'
INCLUDE/o8fuco.h:11: warning: unused variable `o8name'
INCLUDE/o8fuco.h:13: warning: unused variable `o8epsdif'
INCLUDE/o8fuco.h:15: warning: unused variable `o8intakt'
INCLUDE/o8fuco.h:15: warning: unused variable `o8te0'
INCLUDE/o8fuco.h:15: warning: unused variable `o8te1'
INCLUDE/o8fuco.h:15: warning: unused variable `o8te2'
INCLUDE/o8fuco.h:15: warning: unused variable `o8te3'
INCLUDE/o8fuco.h:15: warning: unused variable `o8singul'
INCLUDE/o8fuco.h:16: warning: unused variable `o8ident'
INCLUDE/o8fuco.h:16: warning: unused variable `o8eqres'
INCLUDE/o8fuco.h:16: warning: unused variable `o8silent'
INCLUDE/o8fuco.h:16: warning: unused variable `o8analyt'
INCLUDE/o8fuco.h:16: warning: unused variable `o8cold'
INCLUDE/o8fuco.h:18: warning: unused variable `o8icf'
INCLUDE/o8fuco.h:18: warning: unused variable `o8icgf'
INCLUDE/o8fuco.h:18: warning: unused variable `o8cfincr'
INCLUDE/o8fuco.h:18: warning: unused variable `o8cres'
INCLUDE/o8fuco.h:18: warning: unused variable `o8cgres'
INCLUDE/o8fuco.h:20: warning: unused variable `o8ffuerr'
INCLUDE/o8fuco.h:20: warning: unused variable `o8confuerr'
INCLUDE/o8fuco.h:25: warning: unused variable `o8nh'
INCLUDE/o8fuco.h:25: warning: unused variable `o8ng'
INCLUDE/o8fuco.h:27: warning: unused variable `o8nonlinlist'
INCLUDE/o8fuco.h:29: warning: unused variable `o8gunit'
INCLUDE/o8fuco.h:31: warning: unused variable `o8gconst'
INCLUDE/o8fuco.h:33: warning: unused variable `o8cfuerr'
INCLUDE/o8fuco.h:38: warning: unused variable `o8numSinguls'
INCLUDE/o8comm.h:12: warning: unused variable `o8runtim'
INCLUDE/o8comm.h:13: warning: unused variable `o8optite'
INCLUDE/o8comm.h:14: warning: unused variable `o8accinf'
INCLUDE/o8comm.h:15: warning: unused variable `o8itstep'
INCLUDE/o8comm.h:15: warning: unused variable `o8phase'
INCLUDE/o8comm.h:17: warning: unused variable `o8upsi'
INCLUDE/o8comm.h:17: warning: unused variable `o8upsi0'
INCLUDE/o8comm.h:17: warning: unused variable `o8upsi1'
INCLUDE/o8comm.h:17: warning: unused variable `o8upsist'
INCLUDE/o8comm.h:17: warning: unused variable `o8psi'
INCLUDE/o8comm.h:17: warning: unused variable `o8psi0'
INCLUDE/o8comm.h:18: warning: unused variable `o8psi1'
INCLUDE/o8comm.h:18: warning: unused variable `o8psist'
INCLUDE/o8comm.h:18: warning: unused variable `o8psimin'
INCLUDE/o8comm.h:19: warning: unused variable `o8phi'
INCLUDE/o8comm.h:19: warning: unused variable `o8phi0'
INCLUDE/o8comm.h:19: warning: unused variable `o8phi1'
INCLUDE/o8comm.h:19: warning: unused variable `o8phimin'
INCLUDE/o8comm.h:19: warning: unused variable `o8fx'
INCLUDE/o8comm.h:19: warning: unused variable `o8fx0'
INCLUDE/o8comm.h:19: warning: unused variable `o8fx1'
INCLUDE/o8comm.h:20: warning: unused variable `o8fxst'
INCLUDE/o8comm.h:20: warning: unused variable `o8fmin'
INCLUDE/o8comm.h:20: warning: unused variable `o8b2n'
INCLUDE/o8comm.h:20: warning: unused variable `o8b2n0'
INCLUDE/o8comm.h:20: warning: unused variable `o8xnorm'
INCLUDE/o8comm.h:20: warning: unused variable `o8x0norm'
INCLUDE/o8comm.h:20: warning: unused variable `o8sig0'
INCLUDE/o8comm.h:20: warning: unused variable `o8dscal'
INCLUDE/o8comm.h:20: warning: unused variable `o8dnorm'
INCLUDE/o8comm.h:20: warning: unused variable `o8d0norm'
INCLUDE/o8comm.h:21: warning: unused variable `o8sig'
INCLUDE/o8comm.h:21: warning: unused variable `o8sigmin'
INCLUDE/o8comm.h:21: warning: unused variable `o8dirder'
INCLUDE/o8comm.h:21: warning: unused variable `o8cosphi'
INCLUDE/o8comm.h:21: warning: unused variable `o8upsim'
INCLUDE/o8comm.h:22: warning: unused variable `o8x'
INCLUDE/o8comm.h:22: warning: unused variable `o8x0'
INCLUDE/o8comm.h:22: warning: unused variable `o8x1'
INCLUDE/o8comm.h:22: warning: unused variable `o8xmin'
INCLUDE/o8comm.h:22: warning: unused variable `o8d'
INCLUDE/o8comm.h:22: warning: unused variable `o8d0'
INCLUDE/o8comm.h:23: warning: unused variable `o8dd'
INCLUDE/o8comm.h:23: warning: unused variable `o8difx'
INCLUDE/o8comm.h:23: warning: unused variable `o8resmin'
INCLUDE/o8comm.h:25: warning: unused variable `o8gradf'
INCLUDE/o8comm.h:25: warning: unused variable `o8gfn'
INCLUDE/o8comm.h:25: warning: unused variable `o8qgf'
INCLUDE/o8comm.h:25: warning: unused variable `o8gphi0'
INCLUDE/o8comm.h:25: warning: unused variable `o8gphi1'
INCLUDE/o8comm.h:26: warning: unused variable `o8gres'
INCLUDE/o8comm.h:26: warning: unused variable `o8gresn'
INCLUDE/o8comm.h:28: warning: unused variable `o8perm'
INCLUDE/o8comm.h:28: warning: unused variable `o8perm1'
INCLUDE/o8comm.h:28: warning: unused variable `o8colno'
INCLUDE/o8comm.h:28: warning: unused variable `o8rank'
INCLUDE/o8comm.h:29: warning: unused variable `o8qr'
INCLUDE/o8comm.h:29: warning: unused variable `o8betaq'
INCLUDE/o8comm.h:29: warning: unused variable `o8diag'
INCLUDE/o8comm.h:30: warning: unused variable `o8cscal'
INCLUDE/o8comm.h:31: warning: unused variable `o8colle'
INCLUDE/o8comm.h:35: warning: unused variable `o8a'
INCLUDE/o8comm.h:35: warning: unused variable `o8scalm'
INCLUDE/o8comm.h:35: warning: unused variable `o8scalm2'
INCLUDE/o8comm.h:35: warning: unused variable `o8diag0'
INCLUDE/o8comm.h:35: warning: unused variable `o8matsc'
INCLUDE/o8comm.h:37: warning: unused variable `o8violis'
INCLUDE/o8comm.h:37: warning: unused variable `o8alist'
INCLUDE/o8comm.h:37: warning: unused variable `o8bind'
INCLUDE/o8comm.h:38: warning: unused variable `o8bind0'
INCLUDE/o8comm.h:38: warning: unused variable `o8aalist'
INCLUDE/o8comm.h:38: warning: unused variable `o8clist'
INCLUDE/o8comm.h:40: warning: unused variable `o8u'
INCLUDE/o8comm.h:40: warning: unused variable `o8u0'
INCLUDE/o8comm.h:41: warning: unused variable `o8w'
INCLUDE/o8comm.h:41: warning: unused variable `o8w1'
INCLUDE/o8comm.h:41: warning: unused variable `o8res'
INCLUDE/o8comm.h:42: warning: unused variable `o8res0'
INCLUDE/o8comm.h:42: warning: unused variable `o8res1'
INCLUDE/o8comm.h:43: warning: unused variable `o8resst'
INCLUDE/o8comm.h:43: warning: unused variable `o8scf'
INCLUDE/o8comm.h:43: warning: unused variable `o8scf0'
INCLUDE/o8comm.h:44: warning: unused variable `o8yu'
INCLUDE/o8comm.h:44: warning: unused variable `o8slack'
INCLUDE/o8comm.h:44: warning: unused variable `o8infeas'
INCLUDE/o8comm.h:44: warning: unused variable `o8work'
INCLUDE/o8comm.h:47: warning: unused variable `o8del'
INCLUDE/o8comm.h:47: warning: unused variable `o8del0'
INCLUDE/o8comm.h:47: warning: unused variable `o8del01'
INCLUDE/o8comm.h:47: warning: unused variable `o8delmin'
INCLUDE/o8comm.h:47: warning: unused variable `o8tau0'
INCLUDE/o8comm.h:47: warning: unused variable `o8tau'
INCLUDE/o8comm.h:47: warning: unused variable `o8ny'
INCLUDE/o8comm.h:48: warning: unused variable `o8smalld'
INCLUDE/o8comm.h:48: warning: unused variable `o8smallw'
INCLUDE/o8comm.h:48: warning: unused variable `o8rho'
INCLUDE/o8comm.h:48: warning: unused variable `o8rho1'
INCLUDE/o8comm.h:48: warning: unused variable `o8eta'
INCLUDE/o8comm.h:48: warning: unused variable `o8epsx'
INCLUDE/o8comm.h:48: warning: unused variable `o8c1d'
INCLUDE/o8comm.h:49: warning: unused variable `o8scfmax'
INCLUDE/o8comm.h:49: warning: unused variable `o8updmy0'
INCLUDE/o8comm.h:49: warning: unused variable `o8tauqp'
INCLUDE/o8comm.h:49: warning: unused variable `o8taufac'
INCLUDE/o8comm.h:49: warning: unused variable `o8taumax'
INCLUDE/o8comm.h:51: warning: unused variable `o8alpha'
INCLUDE/o8comm.h:51: warning: unused variable `o8beta'
INCLUDE/o8comm.h:51: warning: unused variable `o8theta'
INCLUDE/o8comm.h:51: warning: unused variable `o8sigsm'
INCLUDE/o8comm.h:51: warning: unused variable `o8sigla'
INCLUDE/o8comm.h:51: warning: unused variable `o8delta'
INCLUDE/o8comm.h:51: warning: unused variable `o8stptrm'
INCLUDE/o8comm.h:52: warning: unused variable `o8delta1'
INCLUDE/o8comm.h:52: warning: unused variable `o8stmaxl'
INCLUDE/o8comm.h:54: warning: unused variable `o8level'
INCLUDE/o8comm.h:55: warning: unused variable `o8clow'
INCLUDE/o8comm.h:55: warning: unused variable `o8lastdw'
INCLUDE/o8comm.h:55: warning: unused variable `o8lastup'
INCLUDE/o8comm.h:55: warning: unused variable `o8lastch'
INCLUDE/o8comm.h:57: warning: unused variable `o8prou'
INCLUDE/o8comm.h:57: warning: unused variable `o8meu'
INCLUDE/o8comm.h:59: warning: unused variable `o8ug'
INCLUDE/o8comm.h:59: warning: unused variable `o8og'
INCLUDE/o8comm.h:61: warning: unused variable `o8low'
INCLUDE/o8comm.h:61: warning: unused variable `o8up'
INCLUDE/o8comm.h:61: warning: unused variable `o8big'
INCLUDE/o8comm.h:63: warning: unused variable `o8nreset'
INCLUDE/o8comm.h:65: warning: unused variable `o8xst'
INCLUDE/o8comm.h:68: warning: unused variable `o8epsphi'
INCLUDE/o8fint.h:23: warning: unused variable `o8bloc'
INCLUDE/o8fint.h:23: warning: unused variable `o8valid'
INCLUDE/o8fint.h:23: warning: unused variable `o8corr'
INCLUDE/o8fint.h:24: warning: unused variable `o8difftype'
INCLUDE/o8fint.h:25: warning: unused variable `o8xtr'
INCLUDE/o8fint.h:25: warning: unused variable `o8xsc'
INCLUDE/o8fint.h:25: warning: unused variable `o8fu'
INCLUDE/o8fint.h:25: warning: unused variable `o8fugrad'
INCLUDE/o8fint.h:26: warning: unused variable `o8fud'
INCLUDE/o8fint.h:26: warning: unused variable `o8epsfcn'
INCLUDE/o8fint.h:26: warning: unused variable `o8taubnd'
INCLUDE/o8cons.h:4: warning: unused variable `o8zero'
INCLUDE/o8cons.h:4: warning: unused variable `o8one'
INCLUDE/o8cons.h:4: warning: unused variable `o8two'
INCLUDE/o8cons.h:4: warning: unused variable `o8three'
INCLUDE/o8cons.h:4: warning: unused variable `o8four'
INCLUDE/o8cons.h:5: warning: unused variable `o8five'
INCLUDE/o8cons.h:5: warning: unused variable `o8six'
INCLUDE/o8cons.h:5: warning: unused variable `o8seven'
INCLUDE/o8cons.h:6: warning: unused variable `o8twom2'
INCLUDE/o8cons.h:6: warning: unused variable `o8twop4'
INCLUDE/o8cons.h:6: warning: unused variable `o8twop11'
INCLUDE/o8cons.h:6: warning: unused variable `o8onep3'
INCLUDE/o8cons.h:7: warning: unused variable `o8onep5'
INCLUDE/o8cons.h:7: warning: unused variable `o8p2'
INCLUDE/o8cons.h:7: warning: unused variable `o8p4'
INCLUDE/o8cons.h:7: warning: unused variable `o8p5'
INCLUDE/o8cons.h:7: warning: unused variable `o8p7'
INCLUDE/o8cons.h:7: warning: unused variable `o8p8'
INCLUDE/o8cons.h:7: warning: unused variable `o8p9'
INCLUDE/o8cons.h:8: warning: unused variable `o8c45'
INCLUDE/o8cons.h:8: warning: unused variable `o8tm12'
INCLUDE/o8cons.h:9: warning: unused variable `o8tm10'
INCLUDE/o8cons.h:9: warning: unused variable `o8tm9'
INCLUDE/o8cons.h:9: warning: unused variable `o8tm8'
INCLUDE/o8cons.h:9: warning: unused variable `o8tm7'
INCLUDE/o8cons.h:9: warning: unused variable `o8tm6'
INCLUDE/o8cons.h:9: warning: unused variable `o8tm5'
INCLUDE/o8cons.h:10: warning: unused variable `o8tm4'
INCLUDE/o8cons.h:10: warning: unused variable `o8tm3'
INCLUDE/o8cons.h:10: warning: unused variable `o8tm2'
INCLUDE/o8cons.h:10: warning: unused variable `o8tm1'
INCLUDE/o8cons.h:10: warning: unused variable `o8tp1'
INCLUDE/o8cons.h:10: warning: unused variable `o8tp2'
INCLUDE/o8cons.h:11: warning: unused variable `o8tp3'
INCLUDE/o8cons.h:11: warning: unused variable `o8tp4'
optimize.c: In function `user_init':
INCLUDE/o8fuco.h:5: warning: unused variable `o8val'
INCLUDE/o8fuco.h:5: warning: unused variable `o8llow'
INCLUDE/o8fuco.h:5: warning: unused variable `o8lup'
INCLUDE/o8fuco.h:7: warning: unused variable `o8nr'
INCLUDE/o8fuco.h:7: warning: unused variable `o8nres'
INCLUDE/o8fuco.h:7: warning: unused variable `o8ndualm'
INCLUDE/o8fuco.h:7: warning: unused variable `o8mdualm'
INCLUDE/o8fuco.h:9: warning: unused variable `o8epsmac'
INCLUDE/o8fuco.h:9: warning: unused variable `o8tolmac'
INCLUDE/o8fuco.h:9: warning: unused variable `o8deldif'
INCLUDE/o8fuco.h:15: warning: unused variable `o8intakt'
INCLUDE/o8fuco.h:15: warning: unused variable `o8te0'
INCLUDE/o8fuco.h:15: warning: unused variable `o8te1'
INCLUDE/o8fuco.h:15: warning: unused variable `o8te2'
INCLUDE/o8fuco.h:15: warning: unused variable `o8te3'
INCLUDE/o8fuco.h:15: warning: unused variable `o8singul'
INCLUDE/o8fuco.h:16: warning: unused variable `o8ident'
INCLUDE/o8fuco.h:16: warning: unused variable `o8eqres'
INCLUDE/o8fuco.h:16: warning: unused variable `o8cold'
INCLUDE/o8fuco.h:18: warning: unused variable `o8icf'
INCLUDE/o8fuco.h:18: warning: unused variable `o8icgf'
INCLUDE/o8fuco.h:18: warning: unused variable `o8cfincr'
INCLUDE/o8fuco.h:18: warning: unused variable `o8cres'
INCLUDE/o8fuco.h:18: warning: unused variable `o8cgres'
INCLUDE/o8fuco.h:20: warning: unused variable `o8ffuerr'
INCLUDE/o8fuco.h:20: warning: unused variable `o8confuerr'
INCLUDE/o8fuco.h:25: warning: unused variable `o8nh'
INCLUDE/o8fuco.h:25: warning: unused variable `o8ng'
INCLUDE/o8fuco.h:27: warning: unused variable `o8nonlinlist'
INCLUDE/o8fuco.h:29: warning: unused variable `o8gunit'
INCLUDE/o8fuco.h:31: warning: unused variable `o8gconst'
INCLUDE/o8fuco.h:33: warning: unused variable `o8cfuerr'
INCLUDE/o8fuco.h:38: warning: unused variable `o8numSinguls'
INCLUDE/o8comm.h:12: warning: unused variable `o8runtim'
INCLUDE/o8comm.h:13: warning: unused variable `o8optite'
INCLUDE/o8comm.h:14: warning: unused variable `o8accinf'
INCLUDE/o8comm.h:15: warning: unused variable `o8itstep'
INCLUDE/o8comm.h:15: warning: unused variable `o8phase'
INCLUDE/o8comm.h:17: warning: unused variable `o8upsi'
INCLUDE/o8comm.h:17: warning: unused variable `o8upsi0'
INCLUDE/o8comm.h:17: warning: unused variable `o8upsi1'
INCLUDE/o8comm.h:17: warning: unused variable `o8upsist'
INCLUDE/o8comm.h:17: warning: unused variable `o8psi'
INCLUDE/o8comm.h:17: warning: unused variable `o8psi0'
INCLUDE/o8comm.h:18: warning: unused variable `o8psi1'
INCLUDE/o8comm.h:18: warning: unused variable `o8psist'
INCLUDE/o8comm.h:18: warning: unused variable `o8psimin'
INCLUDE/o8comm.h:19: warning: unused variable `o8phi'
INCLUDE/o8comm.h:19: warning: unused variable `o8phi0'
INCLUDE/o8comm.h:19: warning: unused variable `o8phi1'
INCLUDE/o8comm.h:19: warning: unused variable `o8phimin'
INCLUDE/o8comm.h:19: warning: unused variable `o8fx'
INCLUDE/o8comm.h:19: warning: unused variable `o8fx0'
INCLUDE/o8comm.h:19: warning: unused variable `o8fx1'
INCLUDE/o8comm.h:20: warning: unused variable `o8fxst'
INCLUDE/o8comm.h:20: warning: unused variable `o8fmin'
INCLUDE/o8comm.h:20: warning: unused variable `o8b2n'
INCLUDE/o8comm.h:20: warning: unused variable `o8b2n0'
INCLUDE/o8comm.h:20: warning: unused variable `o8xnorm'
INCLUDE/o8comm.h:20: warning: unused variable `o8x0norm'
INCLUDE/o8comm.h:20: warning: unused variable `o8sig0'
INCLUDE/o8comm.h:20: warning: unused variable `o8dscal'
INCLUDE/o8comm.h:20: warning: unused variable `o8dnorm'
INCLUDE/o8comm.h:20: warning: unused variable `o8d0norm'
INCLUDE/o8comm.h:21: warning: unused variable `o8sig'
INCLUDE/o8comm.h:21: warning: unused variable `o8sigmin'
INCLUDE/o8comm.h:21: warning: unused variable `o8dirder'
INCLUDE/o8comm.h:21: warning: unused variable `o8cosphi'
INCLUDE/o8comm.h:21: warning: unused variable `o8upsim'
INCLUDE/o8comm.h:22: warning: unused variable `o8x0'
INCLUDE/o8comm.h:22: warning: unused variable `o8x1'
INCLUDE/o8comm.h:22: warning: unused variable `o8xmin'
INCLUDE/o8comm.h:22: warning: unused variable `o8d'
INCLUDE/o8comm.h:22: warning: unused variable `o8d0'
INCLUDE/o8comm.h:23: warning: unused variable `o8dd'
INCLUDE/o8comm.h:23: warning: unused variable `o8difx'
INCLUDE/o8comm.h:23: warning: unused variable `o8resmin'
INCLUDE/o8comm.h:25: warning: unused variable `o8gradf'
INCLUDE/o8comm.h:25: warning: unused variable `o8gfn'
INCLUDE/o8comm.h:25: warning: unused variable `o8qgf'
INCLUDE/o8comm.h:25: warning: unused variable `o8gphi0'
INCLUDE/o8comm.h:25: warning: unused variable `o8gphi1'
INCLUDE/o8comm.h:26: warning: unused variable `o8gresn'
INCLUDE/o8comm.h:28: warning: unused variable `o8perm'
INCLUDE/o8comm.h:28: warning: unused variable `o8perm1'
INCLUDE/o8comm.h:28: warning: unused variable `o8colno'
INCLUDE/o8comm.h:28: warning: unused variable `o8rank'
INCLUDE/o8comm.h:29: warning: unused variable `o8qr'
INCLUDE/o8comm.h:29: warning: unused variable `o8betaq'
INCLUDE/o8comm.h:29: warning: unused variable `o8diag'
INCLUDE/o8comm.h:30: warning: unused variable `o8cscal'
INCLUDE/o8comm.h:31: warning: unused variable `o8colle'
INCLUDE/o8comm.h:35: warning: unused variable `o8a'
INCLUDE/o8comm.h:35: warning: unused variable `o8scalm'
INCLUDE/o8comm.h:35: warning: unused variable `o8scalm2'
INCLUDE/o8comm.h:35: warning: unused variable `o8diag0'
INCLUDE/o8comm.h:35: warning: unused variable `o8matsc'
INCLUDE/o8comm.h:37: warning: unused variable `o8violis'
INCLUDE/o8comm.h:37: warning: unused variable `o8alist'
INCLUDE/o8comm.h:37: warning: unused variable `o8bind'
INCLUDE/o8comm.h:38: warning: unused variable `o8bind0'
INCLUDE/o8comm.h:38: warning: unused variable `o8aalist'
INCLUDE/o8comm.h:38: warning: unused variable `o8clist'
INCLUDE/o8comm.h:40: warning: unused variable `o8u'
INCLUDE/o8comm.h:40: warning: unused variable `o8u0'
INCLUDE/o8comm.h:41: warning: unused variable `o8w'
INCLUDE/o8comm.h:41: warning: unused variable `o8w1'
INCLUDE/o8comm.h:41: warning: unused variable `o8res'
INCLUDE/o8comm.h:42: warning: unused variable `o8res0'
INCLUDE/o8comm.h:42: warning: unused variable `o8res1'
INCLUDE/o8comm.h:43: warning: unused variable `o8resst'
INCLUDE/o8comm.h:43: warning: unused variable `o8scf'
INCLUDE/o8comm.h:43: warning: unused variable `o8scf0'
INCLUDE/o8comm.h:44: warning: unused variable `o8yu'
INCLUDE/o8comm.h:44: warning: unused variable `o8slack'
INCLUDE/o8comm.h:44: warning: unused variable `o8infeas'
INCLUDE/o8comm.h:44: warning: unused variable `o8work'
INCLUDE/o8comm.h:47: warning: unused variable `o8del'
INCLUDE/o8comm.h:47: warning: unused variable `o8del01'
INCLUDE/o8comm.h:47: warning: unused variable `o8delmin'
INCLUDE/o8comm.h:47: warning: unused variable `o8ny'
INCLUDE/o8comm.h:48: warning: unused variable `o8smalld'
INCLUDE/o8comm.h:48: warning: unused variable `o8smallw'
INCLUDE/o8comm.h:48: warning: unused variable `o8rho'
INCLUDE/o8comm.h:48: warning: unused variable `o8rho1'
INCLUDE/o8comm.h:48: warning: unused variable `o8eta'
INCLUDE/o8comm.h:48: warning: unused variable `o8epsx'
INCLUDE/o8comm.h:48: warning: unused variable `o8c1d'
INCLUDE/o8comm.h:49: warning: unused variable `o8scfmax'
INCLUDE/o8comm.h:49: warning: unused variable `o8updmy0'
INCLUDE/o8comm.h:49: warning: unused variable `o8tauqp'
INCLUDE/o8comm.h:49: warning: unused variable `o8taufac'
INCLUDE/o8comm.h:49: warning: unused variable `o8taumax'
INCLUDE/o8comm.h:51: warning: unused variable `o8alpha'
INCLUDE/o8comm.h:51: warning: unused variable `o8beta'
INCLUDE/o8comm.h:51: warning: unused variable `o8theta'
INCLUDE/o8comm.h:51: warning: unused variable `o8sigsm'
INCLUDE/o8comm.h:51: warning: unused variable `o8sigla'
INCLUDE/o8comm.h:51: warning: unused variable `o8delta'
INCLUDE/o8comm.h:51: warning: unused variable `o8stptrm'
INCLUDE/o8comm.h:52: warning: unused variable `o8delta1'
INCLUDE/o8comm.h:52: warning: unused variable `o8stmaxl'
INCLUDE/o8comm.h:54: warning: unused variable `o8level'
INCLUDE/o8comm.h:55: warning: unused variable `o8clow'
INCLUDE/o8comm.h:55: warning: unused variable `o8lastdw'
INCLUDE/o8comm.h:55: warning: unused variable `o8lastup'
INCLUDE/o8comm.h:55: warning: unused variable `o8lastch'
INCLUDE/o8comm.h:57: warning: unused variable `o8prou'
INCLUDE/o8comm.h:57: warning: unused variable `o8meu'
INCLUDE/o8comm.h:59: warning: unused variable `o8ug'
INCLUDE/o8comm.h:59: warning: unused variable `o8og'
INCLUDE/o8comm.h:65: warning: unused variable `o8xst'
INCLUDE/o8comm.h:68: warning: unused variable `o8epsphi'
INCLUDE/o8fint.h:23: warning: unused variable `o8bloc'
INCLUDE/o8fint.h:23: warning: unused variable `o8valid'
INCLUDE/o8fint.h:23: warning: unused variable `o8corr'
INCLUDE/o8fint.h:25: warning: unused variable `o8xtr'
INCLUDE/o8fint.h:25: warning: unused variable `o8xsc'
INCLUDE/o8fint.h:25: warning: unused variable `o8fu'
INCLUDE/o8fint.h:25: warning: unused variable `o8fugrad'
INCLUDE/o8fint.h:26: warning: unused variable `o8fud'
INCLUDE/o8cons.h:4: warning: unused variable `o8zero'
INCLUDE/o8cons.h:4: warning: unused variable `o8one'
INCLUDE/o8cons.h:4: warning: unused variable `o8two'
INCLUDE/o8cons.h:4: warning: unused variable `o8three'
INCLUDE/o8cons.h:4: warning: unused variable `o8four'
INCLUDE/o8cons.h:5: warning: unused variable `o8five'
INCLUDE/o8cons.h:5: warning: unused variable `o8six'
INCLUDE/o8cons.h:5: warning: unused variable `o8seven'
INCLUDE/o8cons.h:6: warning: unused variable `o8twom2'
INCLUDE/o8cons.h:6: warning: unused variable `o8twop4'
INCLUDE/o8cons.h:6: warning: unused variable `o8twop11'
INCLUDE/o8cons.h:6: warning: unused variable `o8onep3'
INCLUDE/o8cons.h:7: warning: unused variable `o8onep5'
INCLUDE/o8cons.h:7: warning: unused variable `o8p2'
INCLUDE/o8cons.h:7: warning: unused variable `o8p4'
INCLUDE/o8cons.h:7: warning: unused variable `o8p5'
INCLUDE/o8cons.h:7: warning: unused variable `o8p7'
INCLUDE/o8cons.h:7: warning: unused variable `o8p8'
INCLUDE/o8cons.h:7: warning: unused variable `o8p9'
INCLUDE/o8cons.h:8: warning: unused variable `o8c45'
INCLUDE/o8cons.h:8: warning: unused variable `o8tm12'
INCLUDE/o8cons.h:9: warning: unused variable `o8tm10'
INCLUDE/o8cons.h:9: warning: unused variable `o8tm9'
INCLUDE/o8cons.h:9: warning: unused variable `o8tm8'
INCLUDE/o8cons.h:9: warning: unused variable `o8tm7'
INCLUDE/o8cons.h:9: warning: unused variable `o8tm6'
INCLUDE/o8cons.h:9: warning: unused variable `o8tm5'
INCLUDE/o8cons.h:10: warning: unused variable `o8tm4'
INCLUDE/o8cons.h:10: warning: unused variable `o8tm3'
INCLUDE/o8cons.h:10: warning: unused variable `o8tm2'
INCLUDE/o8cons.h:10: warning: unused variable `o8tm1'
INCLUDE/o8cons.h:10: warning: unused variable `o8tp1'
INCLUDE/o8cons.h:10: warning: unused variable `o8tp2'
INCLUDE/o8cons.h:11: warning: unused variable `o8tp3'
INCLUDE/o8cons.h:11: warning: unused variable `o8tp4'
optimize.c: In function `setup':
INCLUDE/o8fuco.h:5: warning: unused variable `o8val'
INCLUDE/o8fuco.h:5: warning: unused variable `o8llow'
INCLUDE/o8fuco.h:5: warning: unused variable `o8lup'
INCLUDE/o8fuco.h:7: warning: unused variable `o8nr'
INCLUDE/o8fuco.h:7: warning: unused variable `o8nres'
INCLUDE/o8fuco.h:7: warning: unused variable `o8ndualm'
INCLUDE/o8fuco.h:7: warning: unused variable `o8mdualm'
INCLUDE/o8fuco.h:9: warning: unused variable `o8epsmac'
INCLUDE/o8fuco.h:9: warning: unused variable `o8tolmac'
INCLUDE/o8fuco.h:9: warning: unused variable `o8deldif'
INCLUDE/o8fuco.h:15: warning: unused variable `o8intakt'
INCLUDE/o8fuco.h:15: warning: unused variable `o8te1'
INCLUDE/o8fuco.h:15: warning: unused variable `o8singul'
INCLUDE/o8fuco.h:16: warning: unused variable `o8ident'
INCLUDE/o8fuco.h:16: warning: unused variable `o8eqres'
INCLUDE/o8fuco.h:16: warning: unused variable `o8cold'
INCLUDE/o8fuco.h:18: warning: unused variable `o8icf'
INCLUDE/o8fuco.h:18: warning: unused variable `o8icgf'
INCLUDE/o8fuco.h:18: warning: unused variable `o8cfincr'
INCLUDE/o8fuco.h:18: warning: unused variable `o8cres'
INCLUDE/o8fuco.h:18: warning: unused variable `o8cgres'
INCLUDE/o8fuco.h:20: warning: unused variable `o8ffuerr'
INCLUDE/o8fuco.h:20: warning: unused variable `o8confuerr'
INCLUDE/o8fuco.h:25: warning: unused variable `o8nh'
INCLUDE/o8fuco.h:25: warning: unused variable `o8ng'
INCLUDE/o8fuco.h:27: warning: unused variable `o8nonlinlist'
INCLUDE/o8fuco.h:29: warning: unused variable `o8gunit'
INCLUDE/o8fuco.h:31: warning: unused variable `o8gconst'
INCLUDE/o8fuco.h:33: warning: unused variable `o8cfuerr'
INCLUDE/o8comm.h:12: warning: unused variable `o8runtim'
INCLUDE/o8comm.h:13: warning: unused variable `o8optite'
INCLUDE/o8comm.h:14: warning: unused variable `o8accinf'
INCLUDE/o8comm.h:15: warning: unused variable `o8itstep'
INCLUDE/o8comm.h:15: warning: unused variable `o8phase'
INCLUDE/o8comm.h:17: warning: unused variable `o8upsi'
INCLUDE/o8comm.h:17: warning: unused variable `o8upsi0'
INCLUDE/o8comm.h:17: warning: unused variable `o8upsi1'
INCLUDE/o8comm.h:17: warning: unused variable `o8upsist'
INCLUDE/o8comm.h:17: warning: unused variable `o8psi'
INCLUDE/o8comm.h:17: warning: unused variable `o8psi0'
INCLUDE/o8comm.h:18: warning: unused variable `o8psi1'
INCLUDE/o8comm.h:18: warning: unused variable `o8psist'
INCLUDE/o8comm.h:18: warning: unused variable `o8psimin'
INCLUDE/o8comm.h:19: warning: unused variable `o8phi'
INCLUDE/o8comm.h:19: warning: unused variable `o8phi0'
INCLUDE/o8comm.h:19: warning: unused variable `o8phi1'
INCLUDE/o8comm.h:19: warning: unused variable `o8phimin'
INCLUDE/o8comm.h:19: warning: unused variable `o8fx'
INCLUDE/o8comm.h:19: warning: unused variable `o8fx0'
INCLUDE/o8comm.h:19: warning: unused variable `o8fx1'
INCLUDE/o8comm.h:20: warning: unused variable `o8fxst'
INCLUDE/o8comm.h:20: warning: unused variable `o8fmin'
INCLUDE/o8comm.h:20: warning: unused variable `o8b2n'
INCLUDE/o8comm.h:20: warning: unused variable `o8b2n0'
INCLUDE/o8comm.h:20: warning: unused variable `o8xnorm'
INCLUDE/o8comm.h:20: warning: unused variable `o8x0norm'
INCLUDE/o8comm.h:20: warning: unused variable `o8sig0'
INCLUDE/o8comm.h:20: warning: unused variable `o8dscal'
INCLUDE/o8comm.h:20: warning: unused variable `o8dnorm'
INCLUDE/o8comm.h:20: warning: unused variable `o8d0norm'
INCLUDE/o8comm.h:21: warning: unused variable `o8sig'
INCLUDE/o8comm.h:21: warning: unused variable `o8sigmin'
INCLUDE/o8comm.h:21: warning: unused variable `o8dirder'
INCLUDE/o8comm.h:21: warning: unused variable `o8cosphi'
INCLUDE/o8comm.h:21: warning: unused variable `o8upsim'
INCLUDE/o8comm.h:22: warning: unused variable `o8x0'
INCLUDE/o8comm.h:22: warning: unused variable `o8x1'
INCLUDE/o8comm.h:22: warning: unused variable `o8xmin'
INCLUDE/o8comm.h:22: warning: unused variable `o8d'
INCLUDE/o8comm.h:22: warning: unused variable `o8d0'
INCLUDE/o8comm.h:23: warning: unused variable `o8dd'
INCLUDE/o8comm.h:23: warning: unused variable `o8difx'
INCLUDE/o8comm.h:23: warning: unused variable `o8resmin'
INCLUDE/o8comm.h:25: warning: unused variable `o8gradf'
INCLUDE/o8comm.h:25: warning: unused variable `o8gfn'
INCLUDE/o8comm.h:25: warning: unused variable `o8qgf'
INCLUDE/o8comm.h:25: warning: unused variable `o8gphi0'
INCLUDE/o8comm.h:25: warning: unused variable `o8gphi1'
INCLUDE/o8comm.h:26: warning: unused variable `o8gresn'
INCLUDE/o8comm.h:28: warning: unused variable `o8perm'
INCLUDE/o8comm.h:28: warning: unused variable `o8perm1'
INCLUDE/o8comm.h:28: warning: unused variable `o8colno'
INCLUDE/o8comm.h:28: warning: unused variable `o8rank'
INCLUDE/o8comm.h:29: warning: unused variable `o8qr'
INCLUDE/o8comm.h:29: warning: unused variable `o8betaq'
INCLUDE/o8comm.h:29: warning: unused variable `o8diag'
INCLUDE/o8comm.h:30: warning: unused variable `o8cscal'
INCLUDE/o8comm.h:31: warning: unused variable `o8colle'
INCLUDE/o8comm.h:35: warning: unused variable `o8a'
INCLUDE/o8comm.h:35: warning: unused variable `o8scalm'
INCLUDE/o8comm.h:35: warning: unused variable `o8scalm2'
INCLUDE/o8comm.h:35: warning: unused variable `o8diag0'
INCLUDE/o8comm.h:35: warning: unused variable `o8matsc'
INCLUDE/o8comm.h:37: warning: unused variable `o8violis'
INCLUDE/o8comm.h:37: warning: unused variable `o8alist'
INCLUDE/o8comm.h:37: warning: unused variable `o8bind'
INCLUDE/o8comm.h:38: warning: unused variable `o8bind0'
INCLUDE/o8comm.h:38: warning: unused variable `o8aalist'
INCLUDE/o8comm.h:38: warning: unused variable `o8clist'
INCLUDE/o8comm.h:40: warning: unused variable `o8u'
INCLUDE/o8comm.h:40: warning: unused variable `o8u0'
INCLUDE/o8comm.h:41: warning: unused variable `o8w'
INCLUDE/o8comm.h:41: warning: unused variable `o8w1'
INCLUDE/o8comm.h:41: warning: unused variable `o8res'
INCLUDE/o8comm.h:42: warning: unused variable `o8res0'
INCLUDE/o8comm.h:42: warning: unused variable `o8res1'
INCLUDE/o8comm.h:43: warning: unused variable `o8resst'
INCLUDE/o8comm.h:43: warning: unused variable `o8scf'
INCLUDE/o8comm.h:43: warning: unused variable `o8scf0'
INCLUDE/o8comm.h:44: warning: unused variable `o8yu'
INCLUDE/o8comm.h:44: warning: unused variable `o8slack'
INCLUDE/o8comm.h:44: warning: unused variable `o8infeas'
INCLUDE/o8comm.h:44: warning: unused variable `o8work'
INCLUDE/o8comm.h:47: warning: unused variable `o8del'
INCLUDE/o8comm.h:47: warning: unused variable `o8del01'
INCLUDE/o8comm.h:47: warning: unused variable `o8delmin'
INCLUDE/o8comm.h:47: warning: unused variable `o8ny'
INCLUDE/o8comm.h:48: warning: unused variable `o8smalld'
INCLUDE/o8comm.h:48: warning: unused variable `o8smallw'
INCLUDE/o8comm.h:48: warning: unused variable `o8rho'
INCLUDE/o8comm.h:48: warning: unused variable `o8rho1'
INCLUDE/o8comm.h:48: warning: unused variable `o8eta'
INCLUDE/o8comm.h:48: warning: unused variable `o8epsx'
INCLUDE/o8comm.h:48: warning: unused variable `o8c1d'
INCLUDE/o8comm.h:49: warning: unused variable `o8scfmax'
INCLUDE/o8comm.h:49: warning: unused variable `o8updmy0'
INCLUDE/o8comm.h:49: warning: unused variable `o8tauqp'
INCLUDE/o8comm.h:49: warning: unused variable `o8taufac'
INCLUDE/o8comm.h:49: warning: unused variable `o8taumax'
INCLUDE/o8comm.h:51: warning: unused variable `o8alpha'
INCLUDE/o8comm.h:51: warning: unused variable `o8beta'
INCLUDE/o8comm.h:51: warning: unused variable `o8theta'
INCLUDE/o8comm.h:51: warning: unused variable `o8sigsm'
INCLUDE/o8comm.h:51: warning: unused variable `o8sigla'
INCLUDE/o8comm.h:51: warning: unused variable `o8delta'
INCLUDE/o8comm.h:51: warning: unused variable `o8stptrm'
INCLUDE/o8comm.h:52: warning: unused variable `o8delta1'
INCLUDE/o8comm.h:52: warning: unused variable `o8stmaxl'
INCLUDE/o8comm.h:54: warning: unused variable `o8level'
INCLUDE/o8comm.h:55: warning: unused variable `o8clow'
INCLUDE/o8comm.h:55: warning: unused variable `o8lastdw'
INCLUDE/o8comm.h:55: warning: unused variable `o8lastup'
INCLUDE/o8comm.h:55: warning: unused variable `o8lastch'
INCLUDE/o8comm.h:57: warning: unused variable `o8prou'
INCLUDE/o8comm.h:57: warning: unused variable `o8meu'
INCLUDE/o8comm.h:59: warning: unused variable `o8ug'
INCLUDE/o8comm.h:59: warning: unused variable `o8og'
INCLUDE/o8comm.h:65: warning: unused variable `o8xst'
INCLUDE/o8comm.h:68: warning: unused variable `o8epsphi'
optimize.c: In function `solchk':
INCLUDE/o8fuco.h:5: warning: unused variable `o8val'
INCLUDE/o8fuco.h:5: warning: unused variable `o8llow'
INCLUDE/o8fuco.h:5: warning: unused variable `o8lup'
INCLUDE/o8fuco.h:7: warning: unused variable `o8nr'
INCLUDE/o8fuco.h:7: warning: unused variable `o8nres'
INCLUDE/o8fuco.h:7: warning: unused variable `o8ndualm'
INCLUDE/o8fuco.h:7: warning: unused variable `o8mdualm'
INCLUDE/o8fuco.h:9: warning: unused variable `o8epsmac'
INCLUDE/o8fuco.h:9: warning: unused variable `o8tolmac'
INCLUDE/o8fuco.h:9: warning: unused variable `o8deldif'
INCLUDE/o8fuco.h:15: warning: unused variable `o8intakt'
INCLUDE/o8fuco.h:15: warning: unused variable `o8te1'
INCLUDE/o8fuco.h:15: warning: unused variable `o8singul'
INCLUDE/o8fuco.h:16: warning: unused variable `o8ident'
INCLUDE/o8fuco.h:16: warning: unused variable `o8eqres'
INCLUDE/o8fuco.h:16: warning: unused variable `o8cold'
INCLUDE/o8fuco.h:18: warning: unused variable `o8icf'
INCLUDE/o8fuco.h:18: warning: unused variable `o8icgf'
INCLUDE/o8fuco.h:18: warning: unused variable `o8cfincr'
INCLUDE/o8fuco.h:18: warning: unused variable `o8cres'
INCLUDE/o8fuco.h:18: warning: unused variable `o8cgres'
INCLUDE/o8fuco.h:20: warning: unused variable `o8ffuerr'
INCLUDE/o8fuco.h:20: warning: unused variable `o8confuerr'
INCLUDE/o8fuco.h:25: warning: unused variable `o8nh'
INCLUDE/o8fuco.h:25: warning: unused variable `o8ng'
INCLUDE/o8fuco.h:27: warning: unused variable `o8nonlinlist'
INCLUDE/o8fuco.h:29: warning: unused variable `o8gunit'
INCLUDE/o8fuco.h:31: warning: unused variable `o8gconst'
INCLUDE/o8fuco.h:33: warning: unused variable `o8cfuerr'
INCLUDE/o8comm.h:12: warning: unused variable `o8runtim'
INCLUDE/o8comm.h:14: warning: unused variable `o8accinf'
INCLUDE/o8comm.h:15: warning: unused variable `o8phase'
INCLUDE/o8comm.h:17: warning: unused variable `o8upsi'
INCLUDE/o8comm.h:17: warning: unused variable `o8upsi0'
INCLUDE/o8comm.h:17: warning: unused variable `o8upsi1'
INCLUDE/o8comm.h:17: warning: unused variable `o8upsist'
INCLUDE/o8comm.h:17: warning: unused variable `o8psi'
INCLUDE/o8comm.h:17: warning: unused variable `o8psi0'
INCLUDE/o8comm.h:18: warning: unused variable `o8psi1'
INCLUDE/o8comm.h:18: warning: unused variable `o8psist'
INCLUDE/o8comm.h:18: warning: unused variable `o8psimin'
INCLUDE/o8comm.h:19: warning: unused variable `o8phi'
INCLUDE/o8comm.h:19: warning: unused variable `o8phi0'
INCLUDE/o8comm.h:19: warning: unused variable `o8phi1'
INCLUDE/o8comm.h:19: warning: unused variable `o8phimin'
INCLUDE/o8comm.h:19: warning: unused variable `o8fx0'
INCLUDE/o8comm.h:19: warning: unused variable `o8fx1'
INCLUDE/o8comm.h:20: warning: unused variable `o8fxst'
INCLUDE/o8comm.h:20: warning: unused variable `o8fmin'
INCLUDE/o8comm.h:20: warning: unused variable `o8b2n'
INCLUDE/o8comm.h:20: warning: unused variable `o8b2n0'
INCLUDE/o8comm.h:20: warning: unused variable `o8xnorm'
INCLUDE/o8comm.h:20: warning: unused variable `o8x0norm'
INCLUDE/o8comm.h:20: warning: unused variable `o8sig0'
INCLUDE/o8comm.h:20: warning: unused variable `o8dscal'
INCLUDE/o8comm.h:20: warning: unused variable `o8dnorm'
INCLUDE/o8comm.h:20: warning: unused variable `o8d0norm'
INCLUDE/o8comm.h:21: warning: unused variable `o8sig'
INCLUDE/o8comm.h:21: warning: unused variable `o8sigmin'
INCLUDE/o8comm.h:21: warning: unused variable `o8dirder'
INCLUDE/o8comm.h:21: warning: unused variable `o8cosphi'
INCLUDE/o8comm.h:21: warning: unused variable `o8upsim'
INCLUDE/o8comm.h:22: warning: unused variable `o8x0'
INCLUDE/o8comm.h:22: warning: unused variable `o8x1'
INCLUDE/o8comm.h:22: warning: unused variable `o8xmin'
INCLUDE/o8comm.h:22: warning: unused variable `o8d'
INCLUDE/o8comm.h:22: warning: unused variable `o8d0'
INCLUDE/o8comm.h:23: warning: unused variable `o8dd'
INCLUDE/o8comm.h:23: warning: unused variable `o8difx'
INCLUDE/o8comm.h:23: warning: unused variable `o8resmin'
INCLUDE/o8comm.h:25: warning: unused variable `o8gradf'
INCLUDE/o8comm.h:25: warning: unused variable `o8gfn'
INCLUDE/o8comm.h:25: warning: unused variable `o8qgf'
INCLUDE/o8comm.h:25: warning: unused variable `o8gphi0'
INCLUDE/o8comm.h:25: warning: unused variable `o8gphi1'
INCLUDE/o8comm.h:26: warning: unused variable `o8gresn'
INCLUDE/o8comm.h:28: warning: unused variable `o8perm'
INCLUDE/o8comm.h:28: warning: unused variable `o8perm1'
INCLUDE/o8comm.h:28: warning: unused variable `o8colno'
INCLUDE/o8comm.h:28: warning: unused variable `o8rank'
INCLUDE/o8comm.h:29: warning: unused variable `o8qr'
INCLUDE/o8comm.h:29: warning: unused variable `o8betaq'
INCLUDE/o8comm.h:29: warning: unused variable `o8diag'
INCLUDE/o8comm.h:30: warning: unused variable `o8cscal'
INCLUDE/o8comm.h:31: warning: unused variable `o8colle'
INCLUDE/o8comm.h:35: warning: unused variable `o8a'
INCLUDE/o8comm.h:35: warning: unused variable `o8scalm'
INCLUDE/o8comm.h:35: warning: unused variable `o8scalm2'
INCLUDE/o8comm.h:35: warning: unused variable `o8diag0'
INCLUDE/o8comm.h:35: warning: unused variable `o8matsc'
INCLUDE/o8comm.h:37: warning: unused variable `o8violis'
INCLUDE/o8comm.h:37: warning: unused variable `o8alist'
INCLUDE/o8comm.h:37: warning: unused variable `o8bind'
INCLUDE/o8comm.h:38: warning: unused variable `o8bind0'
INCLUDE/o8comm.h:38: warning: unused variable `o8aalist'
INCLUDE/o8comm.h:38: warning: unused variable `o8clist'
INCLUDE/o8comm.h:40: warning: unused variable `o8u'
INCLUDE/o8comm.h:40: warning: unused variable `o8u0'
INCLUDE/o8comm.h:41: warning: unused variable `o8w'
INCLUDE/o8comm.h:41: warning: unused variable `o8w1'
INCLUDE/o8comm.h:41: warning: unused variable `o8res'
INCLUDE/o8comm.h:42: warning: unused variable `o8res0'
INCLUDE/o8comm.h:42: warning: unused variable `o8res1'
INCLUDE/o8comm.h:43: warning: unused variable `o8resst'
INCLUDE/o8comm.h:43: warning: unused variable `o8scf'
INCLUDE/o8comm.h:43: warning: unused variable `o8scf0'
INCLUDE/o8comm.h:44: warning: unused variable `o8yu'
INCLUDE/o8comm.h:44: warning: unused variable `o8slack'
INCLUDE/o8comm.h:44: warning: unused variable `o8infeas'
INCLUDE/o8comm.h:44: warning: unused variable `o8work'
INCLUDE/o8comm.h:47: warning: unused variable `o8del'
INCLUDE/o8comm.h:47: warning: unused variable `o8del01'
INCLUDE/o8comm.h:47: warning: unused variable `o8delmin'
INCLUDE/o8comm.h:47: warning: unused variable `o8ny'
INCLUDE/o8comm.h:48: warning: unused variable `o8smalld'
INCLUDE/o8comm.h:48: warning: unused variable `o8smallw'
INCLUDE/o8comm.h:48: warning: unused variable `o8rho'
INCLUDE/o8comm.h:48: warning: unused variable `o8rho1'
INCLUDE/o8comm.h:48: warning: unused variable `o8eta'
INCLUDE/o8comm.h:48: warning: unused variable `o8epsx'
INCLUDE/o8comm.h:48: warning: unused variable `o8c1d'
INCLUDE/o8comm.h:49: warning: unused variable `o8scfmax'
INCLUDE/o8comm.h:49: warning: unused variable `o8updmy0'
INCLUDE/o8comm.h:49: warning: unused variable `o8tauqp'
INCLUDE/o8comm.h:49: warning: unused variable `o8taufac'
INCLUDE/o8comm.h:49: warning: unused variable `o8taumax'
INCLUDE/o8comm.h:51: warning: unused variable `o8alpha'
INCLUDE/o8comm.h:51: warning: unused variable `o8beta'
INCLUDE/o8comm.h:51: warning: unused variable `o8theta'
INCLUDE/o8comm.h:51: warning: unused variable `o8sigsm'
INCLUDE/o8comm.h:51: warning: unused variable `o8sigla'
INCLUDE/o8comm.h:51: warning: unused variable `o8delta'
INCLUDE/o8comm.h:51: warning: unused variable `o8stptrm'
INCLUDE/o8comm.h:52: warning: unused variable `o8delta1'
INCLUDE/o8comm.h:52: warning: unused variable `o8stmaxl'
INCLUDE/o8comm.h:54: warning: unused variable `o8level'
INCLUDE/o8comm.h:55: warning: unused variable `o8clow'
INCLUDE/o8comm.h:55: warning: unused variable `o8lastdw'
INCLUDE/o8comm.h:55: warning: unused variable `o8lastup'
INCLUDE/o8comm.h:55: warning: unused variable `o8lastch'
INCLUDE/o8comm.h:57: warning: unused variable `o8prou'
INCLUDE/o8comm.h:57: warning: unused variable `o8meu'
INCLUDE/o8comm.h:59: warning: unused variable `o8ug'
INCLUDE/o8comm.h:59: warning: unused variable `o8og'
INCLUDE/o8comm.h:65: warning: unused variable `o8xst'
INCLUDE/o8comm.h:68: warning: unused variable `o8epsphi'
INCLUDE/o8cons.h:4: warning: unused variable `o8zero'
INCLUDE/o8cons.h:4: warning: unused variable `o8one'
INCLUDE/o8cons.h:4: warning: unused variable `o8two'
INCLUDE/o8cons.h:4: warning: unused variable `o8three'
INCLUDE/o8cons.h:4: warning: unused variable `o8four'
INCLUDE/o8cons.h:5: warning: unused variable `o8five'
INCLUDE/o8cons.h:5: warning: unused variable `o8six'
INCLUDE/o8cons.h:5: warning: unused variable `o8seven'
INCLUDE/o8cons.h:6: warning: unused variable `o8twom2'
INCLUDE/o8cons.h:6: warning: unused variable `o8twop4'
INCLUDE/o8cons.h:6: warning: unused variable `o8twop11'
INCLUDE/o8cons.h:6: warning: unused variable `o8onep3'
INCLUDE/o8cons.h:7: warning: unused variable `o8onep5'
INCLUDE/o8cons.h:7: warning: unused variable `o8p2'
INCLUDE/o8cons.h:7: warning: unused variable `o8p4'
INCLUDE/o8cons.h:7: warning: unused variable `o8p5'
INCLUDE/o8cons.h:7: warning: unused variable `o8p7'
INCLUDE/o8cons.h:7: warning: unused variable `o8p8'
INCLUDE/o8cons.h:7: warning: unused variable `o8p9'
INCLUDE/o8cons.h:8: warning: unused variable `o8c45'
INCLUDE/o8cons.h:8: warning: unused variable `o8tm12'
INCLUDE/o8cons.h:9: warning: unused variable `o8tm10'
INCLUDE/o8cons.h:9: warning: unused variable `o8tm9'
INCLUDE/o8cons.h:9: warning: unused variable `o8tm8'
INCLUDE/o8cons.h:9: warning: unused variable `o8tm7'
INCLUDE/o8cons.h:9: warning: unused variable `o8tm6'
INCLUDE/o8cons.h:9: warning: unused variable `o8tm5'
INCLUDE/o8cons.h:10: warning: unused variable `o8tm4'
INCLUDE/o8cons.h:10: warning: unused variable `o8tm3'
INCLUDE/o8cons.h:10: warning: unused variable `o8tm2'
INCLUDE/o8cons.h:10: warning: unused variable `o8tm1'
INCLUDE/o8cons.h:10: warning: unused variable `o8tp1'
INCLUDE/o8cons.h:10: warning: unused variable `o8tp2'
INCLUDE/o8cons.h:11: warning: unused variable `o8tp3'
INCLUDE/o8cons.h:11: warning: unused variable `o8tp4'
optimize.c: In function `ef':
INCLUDE/o8fuco.h:5: warning: unused variable `o8val'
INCLUDE/o8fuco.h:5: warning: unused variable `o8llow'
INCLUDE/o8fuco.h:5: warning: unused variable `o8lup'
INCLUDE/o8fuco.h:7: warning: unused variable `o8nr'
INCLUDE/o8fuco.h:7: warning: unused variable `o8nres'
INCLUDE/o8fuco.h:7: warning: unused variable `o8ndualm'
INCLUDE/o8fuco.h:7: warning: unused variable `o8mdualm'
INCLUDE/o8fuco.h:9: warning: unused variable `o8epsmac'
INCLUDE/o8fuco.h:9: warning: unused variable `o8tolmac'
INCLUDE/o8fuco.h:9: warning: unused variable `o8deldif'
INCLUDE/o8fuco.h:15: warning: unused variable `o8intakt'
INCLUDE/o8fuco.h:15: warning: unused variable `o8te1'
INCLUDE/o8fuco.h:15: warning: unused variable `o8singul'
INCLUDE/o8fuco.h:16: warning: unused variable `o8ident'
INCLUDE/o8fuco.h:16: warning: unused variable `o8eqres'
INCLUDE/o8fuco.h:16: warning: unused variable `o8cold'
INCLUDE/o8fuco.h:18: warning: unused variable `o8icf'
INCLUDE/o8fuco.h:18: warning: unused variable `o8icgf'
INCLUDE/o8fuco.h:18: warning: unused variable `o8cfincr'
INCLUDE/o8fuco.h:18: warning: unused variable `o8cres'
INCLUDE/o8fuco.h:18: warning: unused variable `o8cgres'
INCLUDE/o8fuco.h:20: warning: unused variable `o8ffuerr'
INCLUDE/o8fuco.h:20: warning: unused variable `o8confuerr'
INCLUDE/o8fuco.h:25: warning: unused variable `o8nh'
INCLUDE/o8fuco.h:25: warning: unused variable `o8ng'
INCLUDE/o8fuco.h:27: warning: unused variable `o8nonlinlist'
INCLUDE/o8fuco.h:29: warning: unused variable `o8gunit'
INCLUDE/o8fuco.h:31: warning: unused variable `o8gconst'
INCLUDE/o8fuco.h:33: warning: unused variable `o8cfuerr'
optimize.c: In function `egradf':
INCLUDE/o8fuco.h:5: warning: unused variable `o8val'
INCLUDE/o8fuco.h:5: warning: unused variable `o8llow'
INCLUDE/o8fuco.h:5: warning: unused variable `o8lup'
INCLUDE/o8fuco.h:7: warning: unused variable `o8nr'
INCLUDE/o8fuco.h:7: warning: unused variable `o8nres'
INCLUDE/o8fuco.h:7: warning: unused variable `o8ndualm'
INCLUDE/o8fuco.h:7: warning: unused variable `o8mdualm'
INCLUDE/o8fuco.h:9: warning: unused variable `o8epsmac'
INCLUDE/o8fuco.h:9: warning: unused variable `o8tolmac'
INCLUDE/o8fuco.h:9: warning: unused variable `o8deldif'
INCLUDE/o8fuco.h:15: warning: unused variable `o8intakt'
INCLUDE/o8fuco.h:15: warning: unused variable `o8te1'
INCLUDE/o8fuco.h:15: warning: unused variable `o8singul'
INCLUDE/o8fuco.h:16: warning: unused variable `o8ident'
INCLUDE/o8fuco.h:16: warning: unused variable `o8eqres'
INCLUDE/o8fuco.h:16: warning: unused variable `o8cold'
INCLUDE/o8fuco.h:18: warning: unused variable `o8icf'
INCLUDE/o8fuco.h:18: warning: unused variable `o8icgf'
INCLUDE/o8fuco.h:18: warning: unused variable `o8cfincr'
INCLUDE/o8fuco.h:18: warning: unused variable `o8cres'
INCLUDE/o8fuco.h:18: warning: unused variable `o8cgres'
INCLUDE/o8fuco.h:20: warning: unused variable `o8ffuerr'
INCLUDE/o8fuco.h:20: warning: unused variable `o8confuerr'
INCLUDE/o8fuco.h:25: warning: unused variable `o8nh'
INCLUDE/o8fuco.h:25: warning: unused variable `o8ng'
INCLUDE/o8fuco.h:27: warning: unused variable `o8nonlinlist'
INCLUDE/o8fuco.h:29: warning: unused variable `o8gunit'
INCLUDE/o8fuco.h:31: warning: unused variable `o8gconst'
INCLUDE/o8fuco.h:33: warning: unused variable `o8cfuerr'
optimize.c: In function `econ':
INCLUDE/o8fuco.h:5: warning: unused variable `o8val'
INCLUDE/o8fuco.h:5: warning: unused variable `o8llow'
INCLUDE/o8fuco.h:5: warning: unused variable `o8lup'
INCLUDE/o8fuco.h:7: warning: unused variable `o8nr'
INCLUDE/o8fuco.h:7: warning: unused variable `o8nres'
INCLUDE/o8fuco.h:7: warning: unused variable `o8ndualm'
INCLUDE/o8fuco.h:7: warning: unused variable `o8mdualm'
INCLUDE/o8fuco.h:9: warning: unused variable `o8epsmac'
INCLUDE/o8fuco.h:9: warning: unused variable `o8tolmac'
INCLUDE/o8fuco.h:9: warning: unused variable `o8deldif'
INCLUDE/o8fuco.h:15: warning: unused variable `o8intakt'
INCLUDE/o8fuco.h:15: warning: unused variable `o8te1'
INCLUDE/o8fuco.h:15: warning: unused variable `o8singul'
INCLUDE/o8fuco.h:16: warning: unused variable `o8ident'
INCLUDE/o8fuco.h:16: warning: unused variable `o8eqres'
INCLUDE/o8fuco.h:16: warning: unused variable `o8cold'
INCLUDE/o8fuco.h:18: warning: unused variable `o8icf'
INCLUDE/o8fuco.h:18: warning: unused variable `o8icgf'
INCLUDE/o8fuco.h:18: warning: unused variable `o8cfincr'
INCLUDE/o8fuco.h:18: warning: unused variable `o8cres'
INCLUDE/o8fuco.h:18: warning: unused variable `o8cgres'
INCLUDE/o8fuco.h:20: warning: unused variable `o8ffuerr'
INCLUDE/o8fuco.h:20: warning: unused variable `o8confuerr'
INCLUDE/o8fuco.h:25: warning: unused variable `o8nh'
INCLUDE/o8fuco.h:25: warning: unused variable `o8ng'
INCLUDE/o8fuco.h:27: warning: unused variable `o8nonlinlist'
INCLUDE/o8fuco.h:29: warning: unused variable `o8gunit'
INCLUDE/o8fuco.h:31: warning: unused variable `o8gconst'
INCLUDE/o8fuco.h:33: warning: unused variable `o8cfuerr'
optimize.c: In function `econgrad':
INCLUDE/o8fuco.h:5: warning: unused variable `o8val'
INCLUDE/o8fuco.h:5: warning: unused variable `o8llow'
INCLUDE/o8fuco.h:5: warning: unused variable `o8lup'
INCLUDE/o8fuco.h:7: warning: unused variable `o8nr'
INCLUDE/o8fuco.h:7: warning: unused variable `o8nres'
INCLUDE/o8fuco.h:7: warning: unused variable `o8ndualm'
INCLUDE/o8fuco.h:7: warning: unused variable `o8mdualm'
INCLUDE/o8fuco.h:9: warning: unused variable `o8epsmac'
INCLUDE/o8fuco.h:9: warning: unused variable `o8tolmac'
INCLUDE/o8fuco.h:9: warning: unused variable `o8deldif'
INCLUDE/o8fuco.h:15: warning: unused variable `o8intakt'
INCLUDE/o8fuco.h:15: warning: unused variable `o8te1'
INCLUDE/o8fuco.h:15: warning: unused variable `o8singul'
INCLUDE/o8fuco.h:16: warning: unused variable `o8ident'
INCLUDE/o8fuco.h:16: warning: unused variable `o8eqres'
INCLUDE/o8fuco.h:16: warning: unused variable `o8cold'
INCLUDE/o8fuco.h:18: warning: unused variable `o8icf'
INCLUDE/o8fuco.h:18: warning: unused variable `o8icgf'
INCLUDE/o8fuco.h:18: warning: unused variable `o8cfincr'
INCLUDE/o8fuco.h:18: warning: unused variable `o8cres'
INCLUDE/o8fuco.h:18: warning: unused variable `o8cgres'
INCLUDE/o8fuco.h:20: warning: unused variable `o8ffuerr'
INCLUDE/o8fuco.h:20: warning: unused variable `o8confuerr'
INCLUDE/o8fuco.h:25: warning: unused variable `o8nh'
INCLUDE/o8fuco.h:25: warning: unused variable `o8ng'
INCLUDE/o8fuco.h:27: warning: unused variable `o8nonlinlist'
INCLUDE/o8fuco.h:29: warning: unused variable `o8gunit'
INCLUDE/o8fuco.h:31: warning: unused variable `o8gconst'
INCLUDE/o8fuco.h:33: warning: unused variable `o8cfuerr'
gcc  -IINCLUDE -Id:/biocbld/bbs-2.1-bioc/R/include  -Wall -O3 -std=gnu99   -c posterior.c -o posterior.o
gcc  -IINCLUDE -Id:/biocbld/bbs-2.1-bioc/R/include  -Wall -O3 -std=gnu99   -c precalc.c -o precalc.o
gcc  -IINCLUDE -Id:/biocbld/bbs-2.1-bioc/R/include  -Wall -O3 -std=gnu99   -c rio.c -o rio.o
gcc  -IINCLUDE -Id:/biocbld/bbs-2.1-bioc/R/include  -Wall -O3 -std=gnu99   -c theta.c -o theta.o
gcc  -IINCLUDE -Id:/biocbld/bbs-2.1-bioc/R/include  -Wall -O3 -std=gnu99   -c user_eval.c -o user_eval.o
user_eval.c: In function `user_eval':
INCLUDE/o8fuco.h:5: warning: unused variable `o8val'
INCLUDE/o8fuco.h:5: warning: unused variable `o8llow'
INCLUDE/o8fuco.h:5: warning: unused variable `o8lup'
INCLUDE/o8fuco.h:7: warning: unused variable `o8nr'
INCLUDE/o8fuco.h:7: warning: unused variable `o8nres'
INCLUDE/o8fuco.h:7: warning: unused variable `o8nstep'
INCLUDE/o8fuco.h:7: warning: unused variable `o8ndualm'
INCLUDE/o8fuco.h:7: warning: unused variable `o8mdualm'
INCLUDE/o8fuco.h:9: warning: unused variable `o8epsmac'
INCLUDE/o8fuco.h:9: warning: unused variable `o8tolmac'
INCLUDE/o8fuco.h:11: warning: unused variable `o8name'
INCLUDE/o8fuco.h:13: warning: unused variable `o8epsdif'
INCLUDE/o8fuco.h:15: warning: unused variable `o8intakt'
INCLUDE/o8fuco.h:15: warning: unused variable `o8te0'
INCLUDE/o8fuco.h:15: warning: unused variable `o8te1'
INCLUDE/o8fuco.h:15: warning: unused variable `o8te2'
INCLUDE/o8fuco.h:15: warning: unused variable `o8te3'
INCLUDE/o8fuco.h:15: warning: unused variable `o8singul'
INCLUDE/o8fuco.h:16: warning: unused variable `o8ident'
INCLUDE/o8fuco.h:16: warning: unused variable `o8eqres'
INCLUDE/o8fuco.h:16: warning: unused variable `o8silent'
INCLUDE/o8fuco.h:16: warning: unused variable `o8cold'
INCLUDE/o8fuco.h:18: warning: unused variable `o8icf'
INCLUDE/o8fuco.h:18: warning: unused variable `o8icgf'
INCLUDE/o8fuco.h:18: warning: unused variable `o8cfincr'
INCLUDE/o8fuco.h:18: warning: unused variable `o8cres'
INCLUDE/o8fuco.h:18: warning: unused variable `o8cgres'
INCLUDE/o8fuco.h:20: warning: unused variable `o8ffuerr'
INCLUDE/o8fuco.h:20: warning: unused variable `o8confuerr'
INCLUDE/o8fuco.h:25: warning: unused variable `o8nh'
INCLUDE/o8fuco.h:25: warning: unused variable `o8ng'
INCLUDE/o8fuco.h:27: warning: unused variable `o8nonlinlist'
INCLUDE/o8fuco.h:29: warning: unused variable `o8gunit'
INCLUDE/o8fuco.h:31: warning: unused variable `o8gconst'
INCLUDE/o8fuco.h:33: warning: unused variable `o8cfuerr'
INCLUDE/o8fuco.h:38: warning: unused variable `o8numSinguls'
INCLUDE/o8comm.h:12: warning: unused variable `o8runtim'
INCLUDE/o8comm.h:13: warning: unused variable `o8optite'
INCLUDE/o8comm.h:14: warning: unused variable `o8accinf'
INCLUDE/o8comm.h:15: warning: unused variable `o8itstep'
INCLUDE/o8comm.h:15: warning: unused variable `o8phase'
INCLUDE/o8comm.h:17: warning: unused variable `o8upsi'
INCLUDE/o8comm.h:17: warning: unused variable `o8upsi0'
INCLUDE/o8comm.h:17: warning: unused variable `o8upsi1'
INCLUDE/o8comm.h:17: warning: unused variable `o8upsist'
INCLUDE/o8comm.h:17: warning: unused variable `o8psi'
INCLUDE/o8comm.h:17: warning: unused variable `o8psi0'
INCLUDE/o8comm.h:18: warning: unused variable `o8psi1'
INCLUDE/o8comm.h:18: warning: unused variable `o8psist'
INCLUDE/o8comm.h:18: warning: unused variable `o8psimin'
INCLUDE/o8comm.h:19: warning: unused variable `o8phi'
INCLUDE/o8comm.h:19: warning: unused variable `o8phi0'
INCLUDE/o8comm.h:19: warning: unused variable `o8phi1'
INCLUDE/o8comm.h:19: warning: unused variable `o8phimin'
INCLUDE/o8comm.h:19: warning: unused variable `o8fx'
INCLUDE/o8comm.h:19: warning: unused variable `o8fx0'
INCLUDE/o8comm.h:19: warning: unused variable `o8fx1'
INCLUDE/o8comm.h:20: warning: unused variable `o8fxst'
INCLUDE/o8comm.h:20: warning: unused variable `o8fmin'
INCLUDE/o8comm.h:20: warning: unused variable `o8b2n'
INCLUDE/o8comm.h:20: warning: unused variable `o8b2n0'
INCLUDE/o8comm.h:20: warning: unused variable `o8xnorm'
INCLUDE/o8comm.h:20: warning: unused variable `o8x0norm'
INCLUDE/o8comm.h:20: warning: unused variable `o8sig0'
INCLUDE/o8comm.h:20: warning: unused variable `o8dscal'
INCLUDE/o8comm.h:20: warning: unused variable `o8dnorm'
INCLUDE/o8comm.h:20: warning: unused variable `o8d0norm'
INCLUDE/o8comm.h:21: warning: unused variable `o8sig'
INCLUDE/o8comm.h:21: warning: unused variable `o8sigmin'
INCLUDE/o8comm.h:21: warning: unused variable `o8dirder'
INCLUDE/o8comm.h:21: warning: unused variable `o8cosphi'
INCLUDE/o8comm.h:21: warning: unused variable `o8upsim'
INCLUDE/o8comm.h:22: warning: unused variable `o8x'
INCLUDE/o8comm.h:22: warning: unused variable `o8x0'
INCLUDE/o8comm.h:22: warning: unused variable `o8x1'
INCLUDE/o8comm.h:22: warning: unused variable `o8xmin'
INCLUDE/o8comm.h:22: warning: unused variable `o8d'
INCLUDE/o8comm.h:22: warning: unused variable `o8d0'
INCLUDE/o8comm.h:23: warning: unused variable `o8dd'
INCLUDE/o8comm.h:23: warning: unused variable `o8difx'
INCLUDE/o8comm.h:23: warning: unused variable `o8resmin'
INCLUDE/o8comm.h:25: warning: unused variable `o8gradf'
INCLUDE/o8comm.h:25: warning: unused variable `o8gfn'
INCLUDE/o8comm.h:25: warning: unused variable `o8qgf'
INCLUDE/o8comm.h:25: warning: unused variable `o8gphi0'
INCLUDE/o8comm.h:25: warning: unused variable `o8gphi1'
INCLUDE/o8comm.h:26: warning: unused variable `o8gres'
INCLUDE/o8comm.h:26: warning: unused variable `o8gresn'
INCLUDE/o8comm.h:28: warning: unused variable `o8perm'
INCLUDE/o8comm.h:28: warning: unused variable `o8perm1'
INCLUDE/o8comm.h:28: warning: unused variable `o8colno'
INCLUDE/o8comm.h:28: warning: unused variable `o8rank'
INCLUDE/o8comm.h:29: warning: unused variable `o8qr'
INCLUDE/o8comm.h:29: warning: unused variable `o8betaq'
INCLUDE/o8comm.h:29: warning: unused variable `o8diag'
INCLUDE/o8comm.h:30: warning: unused variable `o8cscal'
INCLUDE/o8comm.h:31: warning: unused variable `o8colle'
INCLUDE/o8comm.h:35: warning: unused variable `o8a'
INCLUDE/o8comm.h:35: warning: unused variable `o8scalm'
INCLUDE/o8comm.h:35: warning: unused variable `o8scalm2'
INCLUDE/o8comm.h:35: warning: unused variable `o8diag0'
INCLUDE/o8comm.h:35: warning: unused variable `o8matsc'
INCLUDE/o8comm.h:37: warning: unused variable `o8violis'
INCLUDE/o8comm.h:37: warning: unused variable `o8alist'
INCLUDE/o8comm.h:37: warning: unused variable `o8bind'
INCLUDE/o8comm.h:38: warning: unused variable `o8bind0'
INCLUDE/o8comm.h:38: warning: unused variable `o8aalist'
INCLUDE/o8comm.h:38: warning: unused variable `o8clist'
INCLUDE/o8comm.h:40: warning: unused variable `o8u'
INCLUDE/o8comm.h:40: warning: unused variable `o8u0'
INCLUDE/o8comm.h:41: warning: unused variable `o8w'
INCLUDE/o8comm.h:41: warning: unused variable `o8w1'
INCLUDE/o8comm.h:41: warning: unused variable `o8res'
INCLUDE/o8comm.h:42: warning: unused variable `o8res0'
INCLUDE/o8comm.h:42: warning: unused variable `o8res1'
INCLUDE/o8comm.h:43: warning: unused variable `o8resst'
INCLUDE/o8comm.h:43: warning: unused variable `o8scf'
INCLUDE/o8comm.h:43: warning: unused variable `o8scf0'
INCLUDE/o8comm.h:44: warning: unused variable `o8yu'
INCLUDE/o8comm.h:44: warning: unused variable `o8slack'
INCLUDE/o8comm.h:44: warning: unused variable `o8infeas'
INCLUDE/o8comm.h:44: warning: unused variable `o8work'
INCLUDE/o8comm.h:46: warning: unused variable `o8iterma'
INCLUDE/o8comm.h:47: warning: unused variable `o8del'
INCLUDE/o8comm.h:47: warning: unused variable `o8del0'
INCLUDE/o8comm.h:47: warning: unused variable `o8del01'
INCLUDE/o8comm.h:47: warning: unused variable `o8delmin'
INCLUDE/o8comm.h:47: warning: unused variable `o8tau0'
INCLUDE/o8comm.h:47: warning: unused variable `o8tau'
INCLUDE/o8comm.h:47: warning: unused variable `o8ny'
INCLUDE/o8comm.h:48: warning: unused variable `o8smalld'
INCLUDE/o8comm.h:48: warning: unused variable `o8smallw'
INCLUDE/o8comm.h:48: warning: unused variable `o8rho'
INCLUDE/o8comm.h:48: warning: unused variable `o8rho1'
INCLUDE/o8comm.h:48: warning: unused variable `o8eta'
INCLUDE/o8comm.h:48: warning: unused variable `o8epsx'
INCLUDE/o8comm.h:48: warning: unused variable `o8c1d'
INCLUDE/o8comm.h:49: warning: unused variable `o8scfmax'
INCLUDE/o8comm.h:49: warning: unused variable `o8updmy0'
INCLUDE/o8comm.h:49: warning: unused variable `o8tauqp'
INCLUDE/o8comm.h:49: warning: unused variable `o8taufac'
INCLUDE/o8comm.h:49: warning: unused variable `o8taumax'
INCLUDE/o8comm.h:51: warning: unused variable `o8alpha'
INCLUDE/o8comm.h:51: warning: unused variable `o8beta'
INCLUDE/o8comm.h:51: warning: unused variable `o8theta'
INCLUDE/o8comm.h:51: warning: unused variable `o8sigsm'
INCLUDE/o8comm.h:51: warning: unused variable `o8sigla'
INCLUDE/o8comm.h:51: warning: unused variable `o8delta'
INCLUDE/o8comm.h:51: warning: unused variable `o8stptrm'
INCLUDE/o8comm.h:52: warning: unused variable `o8delta1'
INCLUDE/o8comm.h:52: warning: unused variable `o8stmaxl'
INCLUDE/o8comm.h:54: warning: unused variable `o8level'
INCLUDE/o8comm.h:55: warning: unused variable `o8clow'
INCLUDE/o8comm.h:55: warning: unused variable `o8lastdw'
INCLUDE/o8comm.h:55: warning: unused variable `o8lastup'
INCLUDE/o8comm.h:55: warning: unused variable `o8lastch'
INCLUDE/o8comm.h:57: warning: unused variable `o8prou'
INCLUDE/o8comm.h:57: warning: unused variable `o8meu'
INCLUDE/o8comm.h:59: warning: unused variable `o8ug'
INCLUDE/o8comm.h:59: warning: unused variable `o8og'
INCLUDE/o8comm.h:61: warning: unused variable `o8low'
INCLUDE/o8comm.h:61: warning: unused variable `o8up'
INCLUDE/o8comm.h:61: warning: unused variable `o8big'
INCLUDE/o8comm.h:63: warning: unused variable `o8nreset'
INCLUDE/o8comm.h:65: warning: unused variable `o8xst'
INCLUDE/o8comm.h:68: warning: unused variable `o8epsphi'
INCLUDE/o8fint.h:23: warning: unused variable `o8bloc'
INCLUDE/o8fint.h:23: warning: unused variable `o8corr'
INCLUDE/o8cons.h:4: warning: unused variable `o8two'
INCLUDE/o8cons.h:5: warning: unused variable `o8five'
INCLUDE/o8cons.h:5: warning: unused variable `o8six'
INCLUDE/o8cons.h:6: warning: unused variable `o8twom2'
INCLUDE/o8cons.h:6: warning: unused variable `o8twop4'
INCLUDE/o8cons.h:6: warning: unused variable `o8twop11'
INCLUDE/o8cons.h:6: warning: unused variable `o8onep3'
INCLUDE/o8cons.h:7: warning: unused variable `o8onep5'
INCLUDE/o8cons.h:7: warning: unused variable `o8p2'
INCLUDE/o8cons.h:7: warning: unused variable `o8p5'
INCLUDE/o8cons.h:7: warning: unused variable `o8p7'
INCLUDE/o8cons.h:7: warning: unused variable `o8p8'
INCLUDE/o8cons.h:7: warning: unused variable `o8p9'
INCLUDE/o8cons.h:8: warning: unused variable `o8tm12'
INCLUDE/o8cons.h:9: warning: unused variable `o8tm10'
INCLUDE/o8cons.h:9: warning: unused variable `o8tm9'
INCLUDE/o8cons.h:9: warning: unused variable `o8tm8'
INCLUDE/o8cons.h:9: warning: unused variable `o8tm7'
INCLUDE/o8cons.h:9: warning: unused variable `o8tm6'
INCLUDE/o8cons.h:9: warning: unused variable `o8tm5'
INCLUDE/o8cons.h:10: warning: unused variable `o8tm4'
INCLUDE/o8cons.h:10: warning: unused variable `o8tm3'
INCLUDE/o8cons.h:10: warning: unused variable `o8tp1'
INCLUDE/o8cons.h:10: warning: unused variable `o8tp2'
INCLUDE/o8cons.h:11: warning: unused variable `o8tp3'
INCLUDE/o8cons.h:11: warning: unused variable `o8tp4'
gcc  -IINCLUDE -Id:/biocbld/bbs-2.1-bioc/R/include  -Wall -O3 -std=gnu99   -c xml.c -o xml.o
windres -I d:/biocbld/bbs-2.1-bioc/R/include  -i cosmo_res.rc -o cosmo_res.o
gcc  -shared -s  -o cosmo.dll cosmo.def alloc.o back.o constraints.o cosmo.o cregistration.o donlp2.o estarts.o eval.o fit.o free.o init.o io.o lstarts.o matLib.o newx.o optimize.o posterior.o precalc.o rio.o theta.o user_eval.o xml.o cosmo_res.o  -Ld:/biocbld/bbs-2.1-bioc/R/bin    -lR
  ... DLL made
  installing DLL
  installing R files
  installing inst files
  installing data files
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'cosmo'
     Formats: text html latex example chm 
  addCon                            text    html    latex   example chm
  align-class                       text    html    latex   example chm
  bfile2tmat                        text    html    latex   example chm
  bgModel                           text    html    latex   example chm
  boundCon-class                    text    html    latex   example chm
  constraintSet-class               text    html    latex   example chm
  cosmo-class                       text    html    latex   example chm
  cosmo                             text    html    latex   example chm
  intInfo-class                     text    html    latex   example chm
  license.cosmo                     text    html    latex   example chm
  makeBoundCon                      text    html    latex   example chm
  makeConSet                        text    html    latex   example chm
  makePalCon                        text    html    latex   example chm
  makePosFreqCon                    text    html    latex   example chm
  makeShapeCon                      text    html    latex   example chm
  makeShapeDiffCon                  text    html    latex   example chm
  makeSubMotifCon                   text    html    latex   example chm
  motifPWM                          text    html    latex   example chm
  palCon-class                      text    html    latex   example chm
  posFreqCon-class                  text    html    latex   example chm
  postProbs-class                   text    html    latex   example chm
  readConFile                       text    html    latex   example chm
  rseq                              text    html    latex   example chm
  shapeCon-class                    text    html    latex   example chm
  shapeDiffCon-class                text    html    latex   example chm
  simScore                          text    html    latex   example chm
  subMotifCon-class                 text    html    latex   example chm
  transMats                         text    html    latex   example chm
  writeConFile                      text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702



Compiling d:\biocbld\bbs-2.1-bioc\meat\cosmo\chm\cosmo.chm





Compile time: 0 minutes, 0 seconds

30	Topics

179	Local links

0	Internet links

1	Graphic





Created d:\biocbld\bbs-2.1-bioc\meat\cosmo\chm\cosmo.chm, 52,974 bytes

Compression decreased file by 61,667 bytes.

  preparing package cosmo for lazy loading
Loading required package: seqLogo
Loading required package: grid
  adding MD5 sums

* DONE (cosmo)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source files
* checking for empty or unneeded directories
* building 'cosmo_1.3.0.tar.gz'
Package 52/234	Hostname	OS	Arch	BUILD	CHECK	BUILD BIN
cosmo 1.3.0 Oliver Bembom Last Changed Date: 2007-04-24 11:31:42 -0700 Last Changed Rev: 24217	lamb1	Linux (SUSE 10.1)	x86_64	OK	OK
	wellington	Linux (SUSE 9.2)	i686	OK	OK
	churchill	Solaris 2.9	sparc	OK	OK
	lemming	Windows Server 2003 (32-bit)	x64	[ OK ]	OK	OK
cosmo

1.3.0

Command output
