Package: MLInterfaces

Version: 1.11.1

Command: D:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD check MLInterfaces_1.11.1.tar.gz

RetCode: 0

Time: 293.3 seconds

Status: OK

CheckDir: MLInterfaces.Rcheck

Warnings: 0

* checking for working latex ... OK
* using log directory 'D:/biocbld/bbs-2.1-bioc/meat/MLInterfaces.Rcheck'
* using R version 2.6.0 Under development (unstable) (2007-04-17 r41210)
* checking for file 'MLInterfaces/DESCRIPTION' ... OK
* this is package 'MLInterfaces' version '1.11.1'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'MLInterfaces' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating MLInterfaces-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating MLInterfaces-manual.tex ... OK
* checking MLInterfaces-manual.tex ... OK

installing R.css in D:/biocbld/bbs-2.1-bioc/meat/MLInterfaces.Rcheck


---------- Making package MLInterfaces ------------
  adding build stamp to DESCRIPTION
  installing R files
  save image
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: genefilter
Loading required package: survival
Loading required package: splines
Loading required package: rpart
Loading required package: rda
[1] "MLLabel"
[1] "predClass"
[1] "groupIndex"
[1] "MLScore"
[1] "probMat"
[1] "probArray"
[1] "membMat"
[1] "qualScore"
[1] "silhouetteVec"
[1] "MLOutput"
[1] "classifOutput"
[1] "clustOutput"
[1] "show"
[1] "show"
[1] "show"
[1] "show"
[1] "show"
[1] "RObject"
[1] "RObject"
[1] "distMat"
[1] "distMat"
[1] "show"
[1] "predLabels"
[1] "predLabels"
[1] "predLabelsTr"
[1] "predLabelsTr"
[1] "predLabels"
[1] "predLabels"
[1] "predLabelsTr"
[1] "predLabelsTr"
[1] "allClass"
[1] "allClass"
[1] "trainInds"
[1] "trainInds"
[1] "confuMat"
[1] "confuMat"
[1] "confuMatTrain"
[1] "confuMatTrain"
[1] "ldaB"
[1] "ldaB"
[1] "qdaB"
[1] "qdaB"
[1] "isoMDSB"
[1] "MLearn"
[1] "MLearn"
[1] "MLearn"
[1] "raboostCont"
[1] "daboostCont"
[1] "show"
[1] "Predict"
[1] "Predict"
[1] "Predict"
[1] "knnB"
[1] "knnB"
[1] "knn1B"
[1] "knn1B"
[1] "lvq1B"
[1] "lvq1B"
[1] "lvq2B"
[1] "lvq2B"
[1] "lvq3B"
[1] "lvq3B"
[1] "olvq1B"
[1] "olvq1B"
[1] "SOMB"
[1] "agnesB"
[1] "agnesB"
[1] "claraB"
[1] "claraB"
[1] "dianaB"
[1] "dianaB"
[1] "fannyB"
[1] "fannyB"
[1] "pamB"
[1] "pamB"
[1] "cvB"
[1] "cvB"
[1] "bclustB"
[1] "bclustB"
[1] "cmeansB"
[1] "cmeansB"
[1] "cshellB"
[1] "cshellB"
[1] "lcaB"
[1] "lcaB"
[1] "naiveBayesB"
[1] "naiveBayesB"
[1] "svmB"
[1] "svmB"
[1] "gbmB"
[1] "gbmB"
[1] "baggingB"
[1] "baggingB"
[1] "ipredknnB"
[1] "ipredknnB"
[1] "sldaB"
[1] "sldaB"
[1] "nnetB"
[1] "nnetB"
[1] "pamrB"
[1] "pamrB"
[1] "getGrid"
[1] "getGrid"
[1] "getGrid"
[1] "planarPlot"
[1] "planarPlot"
[1] "planarPlot"
[1] "randomForestB"
[1] "randomForestB"
[1] "rpartB"
[1] "rpartB"
[1] "silhouetteB"
[1] "silhouetteB"
[1] "silhouetteB"
[1] "stat.diag.daB"
[1] "stat.diag.daB"
[1] "somout"
[1] "show"
[1] "somB"
[1] "somB"
[1] "SOMBout"
[1] "show"
[1] "SOMB"
[1] "hclustB"
[1] "hclustB"
[1] "hclustB"
[1] "hclustB"
[1] "kmeansB"
[1] "kmeansB"
[1] "varImpStruct"
[1] "getVarImp"
[1] "getVarImp"
[1] "show"
[1] "plot"
[1] "xval"
[1] "xval"
[1] "xval"
[1] "xvalLoop"
[1] "xvalLoop"
[1] "xvalML"
[1] "xvalML"
[1] "xvalML"
[1] "xvalML"
[1] "xvalML"
  installing inst files
  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'MLInterfaces'
     Formats: text html latex example chm 
  MLIclust                          text    html    latex   example chm
  MLIntInternals                    text    html    latex   example chm
  MLearn-methods                    text    html    latex   example chm
  RAB                               text    html    latex   example chm
  SOMB                              text    html    latex   example chm
  classifOutput-class               text    html    latex   example chm
  clustOutput-class                 text    html    latex   example chm
  confuMat-methods                  text    html    latex   example chm
  knnB                              text    html    latex   example chm
  planarPlot-methods                text    html    latex   example chm
  raboostCont-class                 text    html    latex   example chm
  varImpStruct-class                text    html    latex   example chm
  xval-methods                      text    html    latex   example chm
  xvalLoop-methods                  text    html    latex           chm
  xvalLoop                          text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling d:\biocbld\bbs-2.1-bioc\meat\MLInterfaces.Rcheck\00_pkg_src\MLInterfaces\chm\MLInterfaces.chm


Compile time: 0 minutes, 0 seconds
16	Topics
245	Local links
0	Internet links
1	Graphic


Created d:\biocbld\bbs-2.1-bioc\meat\MLInterfaces.Rcheck\00_pkg_src\MLInterfaces\chm\MLInterfaces.chm, 47,723 bytes
Compression decreased file by 87,545 bytes.
  adding MD5 sums

* DONE (MLInterfaces)