Package: fbat

Version: 1.0.0

Command: /loc/biocbuild/bbs-2.0-bioc/R/bin/R CMD build fbat

RetCode: 0

Time: 53.8 seconds

Status: OK

PackageFile: fbat_1.0.0.tar.gz

* checking for file 'fbat/DESCRIPTION' ... OK
* preparing 'fbat':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* Installing *source* package 'fbat' ...
** libs
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.0-bioc/R/include -I/loc/biocbuild/bbs-2.0-bioc/R/include  -I/usr/local/include    -fPIC  -g -O2 -Wall -c FBAT.c -o FBAT.o
FBAT.c: In function 'countWords':
FBAT.c:2074: warning: array subscript has type 'char'
FBAT.c:2074: warning: array subscript has type 'char'
FBAT.c:2080: warning: array subscript has type 'char'
FBAT.c: In function 'countLines':
FBAT.c:2091: warning: 'tmpnc2' may be used uninitialized in this function
FBAT.c: In function 'oneNuclearFamily':
FBAT.c:1808: warning: 'sex2' may be used uninitialized in this function
FBAT.c:1808: warning: 'sex1' may be used uninitialized in this function
FBAT.c: In function 'decomposePed':
FBAT.c:1935: warning: 'i' may be used uninitialized in this function
FBAT.c: In function 'checkoneNuclearFamily':
FBAT.c:1627: warning: 'sex2' may be used uninitialized in this function
FBAT.c:1627: warning: 'sex1' may be used uninitialized in this function
FBAT.c: In function 'checkdecomposePed':
FBAT.c:1556: warning: 'i' may be used uninitialized in this function
FBAT.c: In function 'checkCompatible':
FBAT.c:1394: warning: 'start2' may be used uninitialized in this function
FBAT.c: In function 'fbat':
FBAT.c:43: warning: 'start2' may be used uninitialized in this function
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.0-bioc/R/include -I/loc/biocbuild/bbs-2.0-bioc/R/include  -I/usr/local/include    -fPIC  -g -O2 -Wall -c register.c -o register.o
gcc -std=gnu99 -G -L/usr/local/lib -o fbat.so FBAT.o register.o   -L/loc/biocbuild/bbs-2.0-bioc/R/lib -lR
** R
** data
** inst
** save image
Loading required package: MASS
** help
 >>> Building/Updating help pages for package 'fbat'
     Formats: text html latex example 
  CAMP                              text    html    latex   example
  checkMarkers                      text    html    latex   example
  fbat                              text    html    latex   example
  geneSet2Ped                       text    html    latex   example
  pedAFreq                          text    html    latex   example
  pedFlagHomo                       text    html    latex   example
  pedGFreq                          text    html    latex   example
  pedHardyWeinberg                  text    html    latex   example
  summaryPvalue                     text    html    latex   example
  viewFlagHomo                      text    html    latex   example
  viewHW                            text    html    latex   example
  viewstat                          text    html    latex   example
** building package indices ...
Loading required package: methods
Loading required package: combinat

Attaching package: 'combinat'


	The following object(s) are masked from package:utils :

	 combn 

Loading required package: xtable
Loading required package: mvtnorm
* DONE (fbat)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source files
* checking for empty or unneeded directories
* building 'fbat_1.0.0.tar.gz'