Package: DynDoc

Version: 1.13.1

Command: E:\biocbld\2.0d\R\bin\R.exe CMD check DynDoc_1.13.1.tar.gz

RetCode: 1

Time: 30.5 seconds

Status: ERROR

CheckDir: DynDoc.Rcheck

Warnings: NA

* checking for working latex ... OK
* using log directory 'E:/biocbld/2.0d/Rpacks/DynDoc.Rcheck'
* using R version 2.5.0 Under development (unstable) (2006-12-05 r40126)
* checking for file 'DynDoc/DESCRIPTION' ... OK
* this is package 'DynDoc' version '1.13.1'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'DynDoc' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... WARNING
Warning: '\/' is an unrecognized escape in a character string
Warning: '\/' is an unrecognized escape in a character string
Warning: unrecognized escapes removed from "\/\/"
Warning: '\/' is an unrecognized escape in a character string
Warning: unrecognized escape removed from "\/"
* checking R files for non-ASCII characters ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating DynDoc-Ex.R ... OK
* checking examples ... ERROR
Running examples in 'DynDoc-Ex.R' failed.
The error most likely occurred in:

> ### * codeChunk-class
> 
> flush(stderr()); flush(stdout())
> 
> ### Name: codeChunk-class
> ### Title: Class "codeChunk"
> ### Aliases: codeChunk-class codeChunk chunk<- chunk chunkName
> ###   chunk<-,codeChunk-method chunk,codeChunk-method
> ###   chunkName,codeChunk-method evalChunk,codeChunk-method
> ###   getOptions,codeChunk-method show,codeChunk-method
> ###   SweaveOptions,codeChunk-method
> ### Keywords: classes
> 
> ### ** Examples
> 
>     require("utils")
[1] TRUE
>     testfile <- system.file("Sweave", "Sweave-test-1.Rnw", package="utils")
>     z <- Stangle(testfile,driver=tangleToR)
>     getChunk(z,1)
Code chunk  :
 1:10 
Options: Error in cat(list(...), file, sep, fill, labels, append) : 
	argument 2 (type 'S4') cannot be handled by 'cat'
Execution halted

installing R.css in E:/biocbld/2.0d/Rpacks/DynDoc.Rcheck


---------- Making package DynDoc ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  installing R files
  save image
Creating a new generic function for "summary" in "DynDoc"
Warning messages:
1: '\/' is an unrecognized escape in a character string 
2: '\/' is an unrecognized escape in a character string 
3: unrecognized escapes removed from "\/\/" 
4: '\/' is an unrecognized escape in a character string 
5: unrecognized escape removed from "\/" 
6: undefined slot classes in definition of "Vignette": vigPkgVersion(class "VersionNumber") in: .completeClassSlots(ClassDef, where) 
  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'DynDoc'
     Formats: text html latex example chm 
  DynDoc-class                      text    html    latex           chm
  SweaveOptions-class               text    html    latex           chm
  Vignette-class                    text    html    latex           chm
  chunkList-class                   text    html    latex   example chm
  codeChunk-class                   text    html    latex   example chm
  getPkgVigList                     text    html    latex   example chm
  getVignette                       text    html    latex           chm
  getVignetteCode                   text    html    latex           chm
  getVignetteHeader                 text    html    latex           chm
  tangleToR                         text    html    latex   example chm
  vignetteCode-class                text    html    latex           chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\2.0d\Rpacks\DynDoc.Rcheck\00_pkg_src\DynDoc\chm\DynDoc.chm


Compile time: 0 minutes, 0 seconds
12	Topics
119	Local links
0	Internet links
1	Graphic


Created e:\biocbld\2.0d\Rpacks\DynDoc.Rcheck\00_pkg_src\DynDoc\chm\DynDoc.chm, 30,225 bytes
Compression decreased file by 38,968 bytes.
  adding MD5 sums

* DONE (DynDoc)