Package: GeneRfold

Version: 0.1.3

Command: /home/biocbuild/2.0d/R/bin/R CMD check GeneRfold_0.1.3.tar.gz

RetCode: 0

Time: 9.1 seconds

Status: OK

CheckDir: GeneRfold.Rcheck

Warnings: 0

* checking for working latex ... OK
* using log directory '/home/biocbuild/2.0d/Rpacks/GeneRfold.Rcheck'
* using R version 2.5.0 Under development (unstable) (2006-12-05 r40126)
* checking for file 'GeneRfold/DESCRIPTION' ... OK
* this is package 'GeneRfold' version '0.1.3'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'GeneRfold' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for non-ASCII characters ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking for CRLF line endings in C/C++/Fortran sources/headers ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating GeneRfold-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating GeneRfold-manual.tex ... OK
* checking GeneRfold-manual.tex ... OK

* Installing *source* package 'GeneRfold' ...
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ANSI C... none needed
checking for main in -lRNA... yes
configure: creating ./config.status
config.status: creating src/Makevars
** libs
gcc -std=gnu99 -I/home/biocbuild/2.0d/R/include -I/home/biocbuild/2.0d/R/include -I/usr/local/include/  -fPIC -Wno-conversion -I/usr/local/include    -fpic  -g -O2 -Wall -c viennaR.c -o viennaR.o
gcc -std=gnu99 -shared -L/usr/local/lib64 -o GeneRfold.so viennaR.o -L/usr/local/lib/ -lRNA -fPIC   
** R
** inst
** help
 >>> Building/Updating help pages for package 'GeneRfold'
     Formats: text html latex example 
  fold                              text    html    latex   example
  rnaplot                           text    html    latex   example
** building package indices ...
* DONE (GeneRfold)