CHECK report for Ruuid on derby

* checking for working latex ... OK * using log directory '/Users/biocbuild/2.0d/Rpacks/Ruuid.Rcheck' * using R version 2.5.0 Under development (unstable) (2006-10-21 r39702) * checking for file 'Ruuid/DESCRIPTION' ... OK * this is package 'Ruuid' version '1.13.0' * checking package dependencies ... WARNING 'library' or 'require' calls not declared from: Biobase See the information on DESCRIPTION files in the chapter 'Creating R packages' of the 'Writing R Extensions' manual. * checking if this is a source package ... OK * checking whether package 'Ruuid' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for syntax errors ... OK * checking R files for non-ASCII characters ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the name space can be loaded with stated dependencies ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking for CRLF line endings in C/C++/Fortran sources/headers ... OK * checking for portable compilation flags in Makevars ... OK * checking for portable use of $BLAS_LIBS ... OK * creating Ruuid-Ex.R ... OK * checking examples ... OK * checking package vignettes in 'inst/doc' ... OK * creating Ruuid-manual.tex ... OK * checking Ruuid-manual.tex ... OK WARNING: There was 1 warning, see /Users/biocbuild/2.0d/Rpacks/Ruuid.Rcheck/00check.log for details

* Installing *source* package 'Ruuid' ... checking for pkg-config... /opt/local/bin/pkg-config checking for glib-config... /usr/local/bin/glib-config checking for glib-2.0... yes checking PKG_CFLAGS... -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include checking PKG_LIBS... -L/opt/local/lib -lglib-2.0 -lintl -liconv checking for gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ANSI C... none needed checking how to run the C preprocessor... gcc -E checking for egrep... grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking /usr/include/unistd.h usability... yes checking /usr/include/unistd.h presence... yes checking for /usr/include/unistd.h... yes configure: creating ./config.status config.status: creating src/Makevars ** libs ** arch - i386 gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -msse3 -D__NO_MATH_INLINES -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -DHAVE_UNISTD_H=1 -fPIC -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c Rinit.c -o Rinit.o /var/tmp//ccCuOKbr.s:95:indirect jmp without `*' gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -msse3 -D__NO_MATH_INLINES -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -DHAVE_UNISTD_H=1 -fPIC -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c Ruuid.c -o Ruuid.o /var/tmp//ccMxMurs.s:523:indirect jmp without `*' /var/tmp//ccMxMurs.s:538:indirect jmp without `*' /var/tmp//ccMxMurs.s:553:indirect jmp without `*' /var/tmp//ccMxMurs.s:568:indirect jmp without `*' /var/tmp//ccMxMurs.s:583:indirect jmp without `*' /var/tmp//ccMxMurs.s:598:indirect jmp without `*' /var/tmp//ccMxMurs.s:613:indirect jmp without `*' /var/tmp//ccMxMurs.s:628:indirect jmp without `*' /var/tmp//ccMxMurs.s:643:indirect jmp without `*' /var/tmp//ccMxMurs.s:658:indirect jmp without `*' /var/tmp//ccMxMurs.s:673:indirect jmp without `*' /var/tmp//ccMxMurs.s:688:indirect jmp without `*' /var/tmp//ccMxMurs.s:703:indirect jmp without `*' /var/tmp//ccMxMurs.s:718:indirect jmp without `*' /var/tmp//ccMxMurs.s:733:indirect jmp without `*' /var/tmp//ccMxMurs.s:748:indirect jmp without `*' /var/tmp//ccMxMurs.s:763:indirect jmp without `*' /var/tmp//ccMxMurs.s:778:indirect jmp without `*' /var/tmp//ccMxMurs.s:793:indirect jmp without `*' /var/tmp//ccMxMurs.s:808:indirect jmp without `*' gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -msse3 -D__NO_MATH_INLINES -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -DHAVE_UNISTD_H=1 -fPIC -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c clear.c -o clear.o gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -msse3 -D__NO_MATH_INLINES -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -DHAVE_UNISTD_H=1 -fPIC -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c compare.c -o compare.o /var/tmp//ccp9jsOd.s:97:indirect jmp without `*' gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -msse3 -D__NO_MATH_INLINES -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -DHAVE_UNISTD_H=1 -fPIC -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c copy.c -o copy.o gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -msse3 -D__NO_MATH_INLINES -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -DHAVE_UNISTD_H=1 -fPIC -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c gen_uuid.c -o gen_uuid.o /var/tmp//cc4NFgD6.s:471:indirect jmp without `*' /var/tmp//cc4NFgD6.s:486:indirect jmp without `*' /var/tmp//cc4NFgD6.s:501:indirect jmp without `*' /var/tmp//cc4NFgD6.s:516:indirect jmp without `*' /var/tmp//cc4NFgD6.s:531:indirect jmp without `*' /var/tmp//cc4NFgD6.s:546:indirect jmp without `*' /var/tmp//cc4NFgD6.s:561:indirect jmp without `*' /var/tmp//cc4NFgD6.s:576:indirect jmp without `*' /var/tmp//cc4NFgD6.s:591:indirect jmp without `*' /var/tmp//cc4NFgD6.s:606:indirect jmp without `*' /var/tmp//cc4NFgD6.s:621:indirect jmp without `*' /var/tmp//cc4NFgD6.s:636:indirect jmp without `*' gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -msse3 -D__NO_MATH_INLINES -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -DHAVE_UNISTD_H=1 -fPIC -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c isnull.c -o isnull.o gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -msse3 -D__NO_MATH_INLINES -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -DHAVE_UNISTD_H=1 -fPIC -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c pack.c -o pack.o gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -msse3 -D__NO_MATH_INLINES -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -DHAVE_UNISTD_H=1 -fPIC -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c parse.c -o parse.o /var/tmp//cczLRdwM.s:208:indirect jmp without `*' /var/tmp//cczLRdwM.s:223:indirect jmp without `*' gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -msse3 -D__NO_MATH_INLINES -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -DHAVE_UNISTD_H=1 -fPIC -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c unpack.c -o unpack.o gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -msse3 -D__NO_MATH_INLINES -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -DHAVE_UNISTD_H=1 -fPIC -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c unparse.c -o unparse.o /var/tmp//ccfKyQIs.s:89:indirect jmp without `*' /var/tmp//ccfKyQIs.s:104:indirect jmp without `*' gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -msse3 -D__NO_MATH_INLINES -I/opt/local/include/glib-2.0 -I/opt/local/lib/glib-2.0/include -DHAVE_UNISTD_H=1 -fPIC -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c uuid_time.c -o uuid_time.o /var/tmp//ccrctfKS.s:182:indirect jmp without `*' /var/tmp//ccrctfKS.s:197:indirect jmp without `*' /var/tmp//ccrctfKS.s:212:indirect jmp without `*' gcc-4.0 -arch i386 -dynamiclib -Wl,-macosx_version_min -Wl,10.3 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o Ruuid.so Rinit.o Ruuid.o clear.o compare.o copy.o gen_uuid.o isnull.o pack.o parse.o unpack.o unparse.o uuid_time.o -L/opt/local/lib -lglib-2.0 -lintl -liconv -F/Library/Frameworks/R.framework/.. -framework R ** R ** inst ** preparing package for lazy loading ** help >>> Building/Updating help pages for package 'Ruuid' Formats: text html latex example Ruuid-class text html latex example getuuid text html latex example uuidt-class text html latex example ** building package indices ... * DONE (Ruuid)

Package 175/208	OS	Arch	BUILD	CHECK	BUILD BIN
Ruuid 1.13.0 Biocore Team	Linux (SUSE 9.2)	x86_64	OK	WARNINGS
	Linux (SUSE 10.1)	x86_64	OK	WARNINGS
	Linux (SUSE 9.2)	i686	OK	WARNINGS
	Solaris 2.9	sparc	OK	WARNINGS
	Windows Server 2003	x86_64	OK	WARNINGS	OK
	Windows Server 2003	NA	OK	ERROR	OK
	Mac OS X (10.4.6)	i686	OK	[ WARNINGS ]

Ruuid

1.13.0

Command output