Package: beadarray

Version: 1.2.2

Command: D:\biocbld\bbs-1.9\R\bin\R.exe CMD INSTALL --build --library=beadarray.instdir beadarray_1.2.2.tar.gz

RetCode: 0

Time: 21.0 seconds

Status: OK

PackageFile: beadarray_1.2.2.zip

installing R.css in D:/biocbld/bbs-1.9/meat/beadarray.instdir

Using auto-selected zip options 'beadarray-ZIPDATA=zip beadarray-HELP=ziponly'

---------- Making package beadarray ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  making DLL ...
making BLImagePlot.d from BLImagePlot.c
making createBeadSummaryData.d from createBeadSummaryData.c
making findProbeIndices.d from findProbeIndices.c
making readBeadImages.d from readBeadImages.c
making returnTIFF.d from returnTIFF.c
gcc   -ID:/biocbld/bbs-1.9/R/include  -Wall -O2 -std=gnu99   -c BLImagePlot.c -o BLImagePlot.o
gcc   -ID:/biocbld/bbs-1.9/R/include  -Wall -O2 -std=gnu99   -c createBeadSummaryData.c -o createBeadSummaryData.o
createBeadSummaryData.c: In function `findAllOutliers':
createBeadSummaryData.c:243: warning: 'status' might be used uninitialized in this function
gcc   -ID:/biocbld/bbs-1.9/R/include  -Wall -O2 -std=gnu99   -c findProbeIndices.c -o findProbeIndices.o
gcc   -ID:/biocbld/bbs-1.9/R/include  -Wall -O2 -std=gnu99   -c readBeadImages.c -o readBeadImages.o
readBeadImages.c: In function `readBeadImage':
readBeadImages.c:554: warning: 'BeginData' might be used uninitialized in this function
readBeadImages.c:554: warning: 'ImageWidth' might be used uninitialized in this function
readBeadImages.c:554: warning: 'ImageHeight' might be used uninitialized in this function
readBeadImages.c:554: warning: 'StripOffset' might be used uninitialized in this function
readBeadImages.c:555: warning: 'offset' might be used uninitialized in this function
readBeadImages.c:555: warning: 'records' might be used uninitialized in this function
gcc   -ID:/biocbld/bbs-1.9/R/include  -Wall -O2 -std=gnu99   -c returnTIFF.c -o returnTIFF.o
returnTIFF.c: In function `readTIFF':
returnTIFF.c:101: warning: implicit declaration of function `getPixelIntensities'
returnTIFF.c:17: warning: 'BeginData' might be used uninitialized in this function
returnTIFF.c:17: warning: 'ImageWidth' might be used uninitialized in this function
returnTIFF.c:17: warning: 'ImageHeight' might be used uninitialized in this function
returnTIFF.c:17: warning: 'StripOffset' might be used uninitialized in this function
returnTIFF.c:18: warning: 'offset' might be used uninitialized in this function
returnTIFF.c:18: warning: 'records' might be used uninitialized in this function
windres --include-dir D:/biocbld/bbs-1.9/R/include  -i beadarray_res.rc -o beadarray_res.o
gcc  -shared -s  -o beadarray.dll beadarray.def BLImagePlot.o createBeadSummaryData.o findProbeIndices.o readBeadImages.o returnTIFF.o beadarray_res.o  -LD:/biocbld/bbs-1.9/R/bin    -lR
  ... DLL made
  installing DLL
  installing R files
  installing inst files
  installing data files
  installing man source files
  installing indices
  zipping data
  installing help
 >>> Building/Updating help pages for package 'beadarray'
     Formats: text html latex example chm 
  BLData                            text    html    latex           chm
  BSData                            text    html    latex           chm
  BeadLevelNormalise                text    html    latex           chm
  DiffScore                         text    html    latex           chm
  LargeDataObject                   text    html    latex   example chm
  QC                                text    html    latex           chm
  backgroundCorrect                 text    html    latex   example chm
  backgroundNormalise               text    html    latex   example chm
  cbind                             text    html    latex           chm
  class-BeadLevelList               text    html    latex           chm
  class.ExpressionSetIllumina       text    html    latex           chm
  createBeadSummaryData             text    html    latex   example chm
  dim                               text    html    latex           chm
  dimnames                          text    html    latex           chm
  displayTIFFImage                  text    html    latex   example chm
  findAllOutliers                   text    html    latex   example chm
  findBeadStatus                    text    html    latex   example chm
  imageplot                         text    html    latex           chm
  interactivePlots                  text    html    latex           chm
  medianNormalise                   text    html    latex   example chm
  plotBeadIntensities               text    html    latex   example chm
  plotBeadLocations                 text    html    latex   example chm
  plotMA                            text    html    latex           chm
  plotMAXY                          text    html    latex   example chm
  plotOnSAM                         text    html    latex           chm
  plotXY                            text    html    latex           chm
  rankInvariantNormalise            text    html    latex   example chm
  readBeadLevelData                 text    html    latex   example chm
  readBeadSummaryData               text    html    latex   example chm
  readBeadSummaryTargets            text    html    latex   example chm
  readBeadTargets                   text    html    latex   example chm
  readQC                            text    html    latex   example chm
  zipping help files
Microsoft HTML Help Compiler 4.74.8702



Compiling d:\biocbld\bbs-1.9\meat\R.INSTALL\beadarray\chm\beadarray.chm





Compile time: 0 minutes, 0 seconds

33	Topics

120	Local links

0	Internet links

1	Graphic





Created d:\biocbld\bbs-1.9\meat\R.INSTALL\beadarray\chm\beadarray.chm, 61,014 bytes

Compression decreased file by 72,723 bytes.

  preparing package beadarray for lazy loading
Loading required package: limma
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

Loading required package: affy
Loading required package: affyio
  adding MD5 sums

packaged installation of package 'beadarray' as beadarray_1.2.2.zip
* DONE (beadarray)