Package: ecolitk

Version: 1.5.0

Command: /loc/biocbuild/1.9d/R/bin/R CMD check ecolitk_1.5.0.tar.gz

RetCode: 0

Time: 121.1 seconds

Status: WARNINGS

CheckDir: ecolitk.Rcheck

Warnings: 2

* checking for working latex ... OK
* using log directory '/loc/biocbuild/1.9d/Rpacks/ecolitk.Rcheck'
* using R version 2.4.0 alpha (2006-09-10 r39242)
* checking for file 'ecolitk/DESCRIPTION' ... OK
* this is package 'ecolitk' version '1.5.0'
* checking package dependencies ... WARNING
'library' or 'require' calls not declared from:
  graph
See the information on DESCRIPTION files in the chapter 'Creating R
packages' of the 'Writing R Extensions' manual.
* checking if this is a source package ... OK
* checking whether package 'ecolitk' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for non-ASCII characters ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating ecolitk-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... WARNING
*** Source Errors ***
File /loc/biocbuild/1.9d/Rpacks/ecolitk.Rcheck/ecolitk/doc/ecolitk.R :
Error in update.default(pbt) : need an object with call component
* creating ecolitk-manual.tex ... OK
* checking ecolitk-manual.tex ... OK

WARNING: There were 2 warnings, see
  /loc/biocbuild/1.9d/Rpacks/ecolitk.Rcheck/00check.log
for details

* Installing *source* package 'ecolitk' ...
** R
** data
** inst
** help
 >>> Building/Updating help pages for package 'ecolitk'
     Formats: text html latex example 
  ecoli.data                        text    html    latex   example
  ecoligenome.operon                text    html    latex   example
  ecoligenomeBNUM                   text    html    latex
  ecoligenomeBNUM2MULTIFUN          text    html    latex
  gccontent                         text    html    latex
  linkedmultiget                    text    html    latex   example
  multiFun                          text    html    latex   example
  pointsCircle                      text    html    latex   example
  polar2xy                          text    html    latex   example
  polygonChrom                      text    html    latex   example
  wstringapply                      text    html    latex   example
** building package indices ...
* DONE (ecolitk)