CHECK report for RdbiPgSQL on gladstone

* checking for working latex ... OK * using log directory '/home/biocbuild/1.9d/Rpacks/RdbiPgSQL.Rcheck' * using R version 2.4.0 alpha (2006-09-10 r39242) * checking for file 'RdbiPgSQL/DESCRIPTION' ... OK * this is package 'RdbiPgSQL' version '1.7.2' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'RdbiPgSQL' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for syntax errors ... OK * checking R files for non-ASCII characters ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the name space can be loaded with stated dependencies ... WARNING Error: object 'dbAppendTable' not found whilst loading namespace 'RdbiPgSQL' Execution halted A namespace must be able to be loaded with just the base namespace loaded: otherwise if the namespace gets loaded by a saved object, the session will be unable to start. Probably some imports need to be declared in the NAMESPACE file. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd cross-references ... WARNING Missing link(s) in documentation object 'dbAppendTable.PgSQL.conn.Rd': dbWriteTable Missing link(s) in documentation object 'dbClearResult.PgSQL.result.Rd': dbSendQuery Missing link(s) in documentation object 'dbColumnInfo.PgSQL.result.Rd': dbSendQuery Missing link(s) in documentation object 'dbConnectionInfo.PgSQL.conn.Rd': dbConnect Missing link(s) in documentation object 'dbDisconnect.PgSQL.conn.Rd': dbConnect Missing link(s) in documentation object 'dbGetQuery.PgSQL.conn.Rd': dbSendQuery Missing link(s) in documentation object 'dbGetResult.PgSQL.result.Rd': dbSendQuery Missing link(s) in documentation object 'dbListTables.PgSQL.conn.Rd': dbConnect Missing link(s) in documentation object 'dbReadTable.PgSQL.conn.Rd': dbWriteTable Missing link(s) in documentation object 'dbResultInfo.PgSQL.result.Rd': dbSendQuery Missing link(s) in documentation object 'dbSendQuery.PgSQL.conn.Rd': dbResultInfo Missing link(s) in documentation object 'dbWriteTable.PgSQL.conn.Rd': dbReadTable * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking for CRLF line endings in C/C++/Fortran sources/headers ... OK * checking for portable compilation flags in Makevars ... OK * checking for portable use of $BLAS_LIBS ... OK * creating RdbiPgSQL-Ex.R ... OK * checking examples ... OK * creating RdbiPgSQL-manual.tex ... OK * checking RdbiPgSQL-manual.tex ... OK WARNING: There were 2 warnings, see /home/biocbuild/1.9d/Rpacks/RdbiPgSQL.Rcheck/00check.log for details

* Installing *source* package 'RdbiPgSQL' ... creating cache ./config.cache checking for PQconnectdb in -lpq... yes checking how to run the C preprocessor... cc -E checking for /usr/include/libpq-fe.h... no checking how to run the C preprocessor... cc -E checking for /usr/include/pgsql/libpq-fe.h... yes updating cache ./config.cache creating ./config.status creating src/Makevars ** libs gcc -I/home/biocbuild/1.9d/R/include -I/home/biocbuild/1.9d/R/include -I/usr/include/pgsql -I/usr/local/include -fpic -g -O2 -std=gnu99 -Wall -c PgSQL.c -o PgSQL.o gcc -I/home/biocbuild/1.9d/R/include -I/home/biocbuild/1.9d/R/include -I/usr/include/pgsql -I/usr/local/include -fpic -g -O2 -std=gnu99 -Wall -c PgSQLInit.c -o PgSQLInit.o PgSQL.h:9: warning: 'mkInteger' defined but not used PgSQL.h:18: warning: 'mkLogical' defined but not used PgSQL.h:27: warning: 'mkString_safe' defined but not used PgSQL.h:33: warning: 'fetchPgString' defined but not used PgSQL.h:46: warning: 'fetchPgInteger' defined but not used PgSQL.h:66: warning: 'fetchPgDouble' defined but not used PgSQL.h:89: warning: 'fetchPgLogical' defined but not used gcc -shared -L/usr/local/lib64 -o RdbiPgSQL.so PgSQL.o PgSQLInit.o -lpq ** R ** help >>> Building/Updating help pages for package 'RdbiPgSQL' Formats: text html latex example PgSQL text html latex dbAppendTable.PgSQL.conn text html latex dbClearResult.PgSQL.result text html latex dbColumnInfo.PgSQL.result text html latex dbConnect.PgSQL text html latex dbConnectionInfo.PgSQL.conn text html latex dbDisconnect.PgSQL.conn text html latex dbGetQuery.PgSQL.conn text html latex dbGetResult.PgSQL.result text html latex dbListTables.PgSQL.conn text html latex dbReadTable.PgSQL.conn text html latex dbResultInfo.PgSQL.result text html latex dbSendQuery.PgSQL.conn text html latex dbWriteTable.PgSQL.conn text html latex internal text html latex psql text html latex ** building package indices ... * DONE (RdbiPgSQL)

Package 157/205	OS	Arch	BUILD	CHECK	BUILD BIN
RdbiPgSQL 1.7.2 Jianhua Zhang	Linux (SUSE 9.2)	x86_64	OK	WARNINGS
	Linux (SUSE 9.2)	i686	OK	WARNINGS
	Solaris 2.9	sparc	OK	WARNINGS
	Linux (SUSE 10.0)	x86_64	OK	[ WARNINGS ]
	Windows Server 2003	x86_64	OK	ERROR	ERROR
	Windows XP	i686	OK	ERROR	skipped
	Mac OS X (10.4.6)	i686	OK	ERROR

RdbiPgSQL

1.7.2

Command output