flowCore
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see flowCore.
flowCore: Basic structures for flow cytometry data
Bioconductor version: 3.9
Provides S4 data structures and basic functions to deal with flow cytometry data.
Author: B Ellis [aut], Perry Haaland [aut], Florian Hahne [aut], Nathan Le Meur [aut], Nishant Gopalakrishnan [aut], Josef Spidlen [aut], Mike Jiang [aut, cre], Greg Finak [aut], Samuel Granjeaud [ctb]
Maintainer: Mike Jiang <wjiang2 at fhcrc.org>
citation("flowCore")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("flowCore")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("flowCore")| Basic Functions for Flow Cytometry Data | R Script | |
| fcs3.html | HTML | |
| hyperlog.notice.html | HTML | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | CellBasedAssays, FlowCytometry, ImmunoOncology, Infrastructure, Software |
| Version | 1.50.0 |
| In Bioconductor since | BioC 2.0 (R-2.5) (17 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.5.0) |
| Imports | Biobase, BiocGenerics(>= 0.29.2), graph, grDevices, graphics, methods, rrcov, stats, utils, stats4, corpcor, Rcpp, matrixStats, MASS |
| System Requirements | GNU make, C++11 |
| URL |
See More
| Suggests | Rgraphviz, flowViz, flowStats, testthat, flowWorkspace, flowWorkspaceData, openCyto, knitr, ggcyto, gridExtra |
| Linking To | Rcpp, BH (>= 1.65.0.1) |
| Enhances | |
| Depends On Me | flowBeads, flowBin, flowClean, flowFitExampleData, flowFP, flowMatch, flowStats, flowTime, flowTrans, flowViz, flowVS, flowWorkspace, ggcyto, HDCytoData, healthyFlowData, highthroughputassays, immunoClust, ncdfFlow, plateCore, QUALIFIER |
| Imports Me | CATALYST, CONFESS, cydar, CytoDx, cytofast, CytoML, ddPCRclust, diffcyt, flowAI, flowBeads, flowCHIC, flowClust, flowDensity, flowFit, flowMeans, flowMerge, flowPloidy, flowQ, flowQB, FlowSOM, flowTrans, flowType, flowUtils, flowViz, GateFinder, ImmuneSpaceR, MetaCyto, ncdfFlow, oneSENSE, openCyto, plateCore, QUALIFIER, Sconify |
| Suggests Me | COMPASS, flowPloidyData, FlowRepositoryR, RchyOptimyx |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | flowCore_1.50.0.tar.gz |
| Windows Binary | flowCore_1.50.0.zip |
| Mac OS X 10.11 (El Capitan) | flowCore_1.50.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/flowCore |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/flowCore |
| Bioc Package Browser | https://code.bioconductor.org/browse/flowCore/ |
| Package Short Url | https://bioconductor.org/packages/flowCore/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |