ncdfFlow
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see ncdfFlow.
ncdfFlow: A package that provides HDF5 based storage for flow cytometry data.
Bioconductor version: 3.9
Provides HDF5 storage based methods and functions for manipulation of flow cytometry data.
Author: Mike Jiang,Greg Finak,N. Gopalakrishnan
Maintainer: Mike Jiang <wjiang2 at fhcrc.org>
Citation (from within R, enter
citation("ncdfFlow")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ncdfFlow")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ncdfFlow")| Basic Functions for Flow Cytometry Data | R Script | |
| Reference Manual | ||
| README | Text | |
| NEWS | Text |
Details
| biocViews | FlowCytometry, ImmunoOncology, Software |
| Version | 2.30.1 |
| In Bioconductor since | BioC 2.9 (R-2.14) (12.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 2.14.0), flowCore(>= 1.45.11), RcppArmadillo, methods, BH |
| Imports | Biobase, BiocGenerics, flowCore, flowViz, zlibbioc |
| System Requirements | |
| URL |
See More
| Suggests | testthat, parallel |
| Linking To | Rcpp, RcppArmadillo, BH, Rhdf5lib |
| Enhances | |
| Depends On Me | flowStats, flowWorkspace, ggcyto, QUALIFIER |
| Imports Me | CytoML, openCyto |
| Suggests Me | COMPASS, cydar |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | ncdfFlow_2.30.1.tar.gz |
| Windows Binary | ncdfFlow_2.30.1.zip (32- & 64-bit) |
| Mac OS X 10.11 (El Capitan) | ncdfFlow_2.30.1.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/ncdfFlow |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ncdfFlow |
| Bioc Package Browser | https://code.bioconductor.org/browse/ncdfFlow/ |
| Package Short Url | https://bioconductor.org/packages/ncdfFlow/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |