flowFit
This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see flowFitExampleData.
Estimate proliferation in cell-tracking dye studies
Bioconductor version: 3.9
This package estimate the proliferation of a cell population in cell-tracking dye studies. The package uses an R implementation of the Levenberg-Marquardt algorithm (minpack.lm) to fit a set of peaks (corresponding to different generations of cells) over the proliferation-tracking dye distribution in a FACS experiment.
Author: Davide Rambaldi
Maintainer: Davide Rambaldi <davide.rambaldi at gmail.com>
citation("flowFit")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("flowFit")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("flowFit")| Fitting Functions for Flow Cytometry Data | R Script | |
| Reference Manual |
Details
| biocViews | CellBasedAssays, FlowCytometry, ImmunoOncology, Software |
| Version | 1.22.0 |
| In Bioconductor since | BioC 2.13 (R-3.0) (10.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 2.12.2) |
| Imports | flowCore, flowViz, graphics, kza, methods, minpack.lm, gplots |
| System Requirements | |
| URL | |
| Bug Reports | Davide Rambaldi |
See More
| Suggests | flowFitExampleData |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | flowFit_1.22.0.tar.gz |
| Windows Binary | flowFit_1.22.0.zip (32- & 64-bit) |
| Mac OS X 10.11 (El Capitan) | flowFit_1.22.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/flowFit |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/flowFit |
| Bioc Package Browser | https://code.bioconductor.org/browse/flowFit/ |
| Package Short Url | https://bioconductor.org/packages/flowFit/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |