bluster
This is the development version of bluster; for the stable release version, see bluster.
Clustering Algorithms for Bioconductor
Bioconductor version: Development (3.23)
Wraps common clustering algorithms in an easily extended S4 framework. Backends are implemented for hierarchical, k-means and graph-based clustering. Several utilities are also provided to compare and evaluate clustering results.
Author: Aaron Lun [aut, cre], Stephanie Hicks [ctb], Basil Courbayre [ctb], Tuomas Borman [ctb], Leo Lahti [ctb]
Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>
citation("bluster")):
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("bluster")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | Clustering, GeneExpression, ImmunoOncology, SingleCell, Software, Transcriptomics |
| Version | 1.19.1 |
| In Bioconductor since | BioC 3.12 (R-4.0) (5 years) |
| License | GPL-3 |
| Depends | |
| Imports | stats, methods, utils, cluster, Matrix, Rcpp, igraph, S4Vectors, BiocParallel, BiocNeighbors |
| System Requirements | C++17 |
| URL |
See More
| Suggests | knitr, rmarkdown, testthat, BiocStyle, dynamicTreeCut, scRNAseq, scuttle, scater, scran, pheatmap, viridis, mbkmeans, kohonen, apcluster, DirichletMultinomial, vegan, fastcluster |
| Linking To | Rcpp, assorthead |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/bluster |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/bluster |
| Package Short Url | https://bioconductor.org/packages/bluster/ |
| Package Downloads Report | Download Stats |