snapCGH
This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see snapCGH.
Segmentation, normalisation and processing of aCGH data.
Bioconductor version: 3.9
Methods for segmenting, normalising and processing aCGH data; including plotting functions for visualising raw and segmented data for individual and multiple arrays.
Author: Mike L. Smith, John C. Marioni, Steven McKinney, Thomas Hardcastle, Natalie P. Thorne
Maintainer: John Marioni <marioni at uchicago.edu>
citation("snapCGH")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("snapCGH")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("snapCGH")| Segmentation Overview | R Script | |
| Reference Manual |
Details
| biocViews | CopyNumberVariation, Microarray, Preprocessing, Software, TwoChannel |
| Version | 1.54.0 |
| In Bioconductor since | BioC 1.8 (R-2.3) (18 years) |
| License | GPL |
| Depends | limma, DNAcopy, methods |
| Imports | aCGH, cluster, DNAcopy, GLAD, graphics, grDevices, limma, methods, stats, tilingArray, utils |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | ADaCGH2 |
| Suggests Me | beadarraySNP |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | snapCGH_1.54.0.tar.gz |
| Windows Binary | snapCGH_1.54.0.zip (32- & 64-bit) |
| Mac OS X 10.11 (El Capitan) | snapCGH_1.54.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/snapCGH |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/snapCGH |
| Bioc Package Browser | https://code.bioconductor.org/browse/snapCGH/ |
| Package Short Url | https://bioconductor.org/packages/snapCGH/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |