aCGH
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see aCGH.
Classes and functions for Array Comparative Genomic Hybridization data.
Bioconductor version: 3.9
Functions for reading aCGH data from image analysis output files and clone information files, creation of aCGH S3 objects for storing these data. Basic methods for accessing/replacing, subsetting, printing and plotting aCGH objects.
Author: Jane Fridlyand <jfridlyand at cc.ucsf.edu>, Peter Dimitrov <dimitrov at stat.Berkeley.EDU>
Maintainer: Peter Dimitrov <dimitrov at stat.Berkeley.EDU>
citation("aCGH")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("aCGH")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("aCGH")| aCGH Overview | R Script | |
| Reference Manual |
Details
| biocViews | CopyNumberVariation, DataImport, Genetics, Software |
| Version | 1.62.0 |
| In Bioconductor since | BioC 1.6 (R-2.1) or earlier (> 19 years) |
| License | GPL-2 |
| Depends | R (>= 2.10), cluster, survival, multtest |
| Imports | Biobase, cluster, grDevices, graphics, methods, multtest, stats, survival, splines, utils |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | CRImage |
| Imports Me | ADaCGH2, rCGH, snapCGH |
| Suggests Me | beadarraySNP |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | aCGH_1.62.0.tar.gz |
| Windows Binary | aCGH_1.62.0.zip (32- & 64-bit) |
| Mac OS X 10.11 (El Capitan) | aCGH_1.62.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/aCGH |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/aCGH |
| Bioc Package Browser | https://code.bioconductor.org/browse/aCGH/ |
| Package Short Url | https://bioconductor.org/packages/aCGH/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |