ExperimentHub
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see ExperimentHub.
Client to access ExperimentHub resources
Bioconductor version: 3.9
This package provides a client for the Bioconductor ExperimentHub web resource. ExperimentHub provides a central location where curated data from experiments, publications or training courses can be accessed. Each resource has associated metadata, tags and date of modification. The client creates and manages a local cache of files retrieved enabling quick and reproducible access.
Author: Bioconductor Package Maintainer <maintainer at bioconductor.org>
Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>
citation("ExperimentHub")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ExperimentHub")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ExperimentHub")| Creating An ExperimentHub Package | HTML | R Script |
| ExperimentHub: Access the ExperimentHub Web Service | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DataImport, GUI, Infrastructure, Software, ThirdPartyClient |
| Version | 1.10.0 |
| In Bioconductor since | BioC 3.4 (R-3.3) (7.5 years) |
| License | Artistic-2.0 |
| Depends | methods, BiocGenerics(>= 0.15.10), AnnotationHub(>= 2.15.9), BiocFileCache(>= 1.5.1) |
| Imports | utils, S4Vectors, BiocManager, curl, rappdirs |
| System Requirements | |
| URL |
See More
| Suggests | knitr, BiocStyle |
| Linking To | |
| Enhances | ExperimentHubData |
| Depends On Me | adductomicsR, allenpvc, alpineData, bodymapRat, brainImageRdata, CellMapperData, curatedAdipoChIP, curatedMetagenomicData, FlowSorted.Blood.EPIC, FlowSorted.CordBloodCombined.450k, HDCytoData, HumanAffyData, mcsurvdata, MetaGxBreast, MetaGxOvarian, MetaGxPancreas, NestLink, restfulSEData, SeqSQC, sesameData, tcgaWGBSData.hg19 |
| Imports Me | adductData, brainImageR, chipseqDBData, CLLmethylation, CopyNeutralIMA, curatedTCGAData, DuoClustering2018, ENmix, ExperimentHubData, GSEABenchmarkeR, HarmonizedTCGAData, HCAData, HMP16SData, restfulSE, TabulaMurisData, TENxBrainData, TENxPBMCData |
| Suggests Me | ANF, AnnotationHub, celaref, celarefData, CellMapper, DEqMS, GSE62944, HDF5Array, tissueTreg |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | ExperimentHub_1.10.0.tar.gz |
| Windows Binary | ExperimentHub_1.10.0.zip (32- & 64-bit) |
| Mac OS X 10.11 (El Capitan) | ExperimentHub_1.10.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/ExperimentHub |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ExperimentHub |
| Bioc Package Browser | https://code.bioconductor.org/browse/ExperimentHub/ |
| Package Short Url | https://bioconductor.org/packages/ExperimentHub/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |