flowStats

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see flowStats.

Statistical methods for the analysis of flow cytometry data


Bioconductor version: 3.7

Methods and functionality to analyse flow data that is beyond the basic infrastructure provided by the flowCore package.

Author: Florian Hahne, Nishant Gopalakrishnan, Alireza Hadj Khodabakhshi, Chao-Jen Wong, Kyongryun Lee

Maintainer: Greg Finak <gfinak at fhcrc.org> and Mike Jiang <wjiang2 at fhcrc.org>

Citation (from within R, enter citation("flowStats")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("flowStats")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("flowStats")
flowStats Overview PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews CellBasedAssays, FlowCytometry, Software
Version 3.38.0
In Bioconductor since BioC 2.4 (R-2.9) (15 years)
License Artistic-2.0
Depends R (>= 2.10), flowCore, fda (>= 2.2.6), cluster, flowWorkspace, ncdfFlow(>= 2.19.5)
Imports BiocGenerics, MASS, flowViz, flowCore, fda (>= 2.2.6), Biobase, methods, grDevices, graphics, stats, utils, KernSmooth, lattice, ks
System Requirements
URL
See More
Suggests xtable
Linking To
Enhances RBGL, ncdfFlow, graph
Depends On Me flowVS, highthroughputassays
Imports Me openCyto, plateCore
Suggests Me cydar, flowCore, flowQ, flowViz, ggcyto
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package flowStats_3.38.0.tar.gz
Windows Binary flowStats_3.38.0.zip
Mac OS X 10.11 (El Capitan) flowStats_3.38.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/flowStats
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/flowStats
Package Short Url https://bioconductor.org/packages/flowStats/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.7 Source Archive