ProtGenerics
This package is for version 3.19 of Bioconductor; for the stable, up-to-date release version, see ProtGenerics.
Generic infrastructure for Bioconductor mass spectrometry packages
Bioconductor version: 3.19
S4 generic functions and classes needed by Bioconductor proteomics packages.
Author: Laurent Gatto <laurent.gatto at uclouvain.be>, Johannes Rainer <johannes.rainer at eurac.edu>
Maintainer: Laurent Gatto <laurent.gatto at uclouvain.be>
Citation (from within R, enter
citation("ProtGenerics")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ProtGenerics")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual | |
| NEWS | Text |
Details
| biocViews | Infrastructure, MassSpectrometry, Proteomics, Software |
| Version | 1.36.0 |
| In Bioconductor since | BioC 3.1 (R-3.2) (9.5 years) |
| License | Artistic-2.0 |
| Depends | methods |
| Imports | |
| System Requirements | |
| URL | https://github.com/RforMassSpectrometry/ProtGenerics |
See More
| Suggests | testthat |
| Linking To | |
| Enhances | |
| Depends On Me | Cardinal, MSnbase, MsExperiment, Spectra, topdownr |
| Imports Me | CompoundDb, MSnID, MetaboAnnotation, MsBackendMassbank, MsBackendMgf, MsBackendMsp, MsBackendRawFileReader, MsBackendSql, MsFeatures, MsQuality, PSMatch, QFeatures, ensembldb, matter, mzID, mzR, xcms |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | ProtGenerics_1.36.0.tar.gz |
| Windows Binary (x86_64) | ProtGenerics_1.36.0.zip (64-bit only) |
| macOS Binary (x86_64) | ProtGenerics_1.36.0.tgz |
| macOS Binary (arm64) | ProtGenerics_1.36.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/ProtGenerics |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ProtGenerics |
| Bioc Package Browser | https://code.bioconductor.org/browse/ProtGenerics/ |
| Package Short Url | https://bioconductor.org/packages/ProtGenerics/ |
| Package Downloads Report | Download Stats |