MsBackendMsp
This package is for version 3.19 of Bioconductor; for the stable, up-to-date release version, see MsBackendMsp.
Mass Spectrometry Data Backend for NIST msp Files
Bioconductor version: 3.19
Mass spectrometry (MS) data backend supporting import and handling of MS/MS spectra from NIST MSP Format (msp) files. Import of data from files with different MSP *flavours* is supported. Objects from this package add support for MSP files to Bioconductor's Spectra package. This package is thus not supposed to be used without the Spectra package that provides a complete infrastructure for MS data handling.
Author: Neumann Steffen [aut] 
, Johannes Rainer [aut, cre] , Michael Witting [ctb]
Maintainer: Johannes Rainer <Johannes.Rainer at eurac.edu>
citation("MsBackendMsp")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("MsBackendMsp")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MsBackendMsp")| MsBackendMsp | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DataImport, Infrastructure, MassSpectrometry, Metabolomics, Proteomics, Software |
| Version | 1.8.0 |
| In Bioconductor since | BioC 3.15 (R-4.2) (2.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 4.1.0), Spectra(>= 1.5.14) |
| Imports | ProtGenerics(>= 1.35.3), BiocParallel, S4Vectors, IRanges, MsCoreUtils, methods, stats |
| System Requirements | |
| URL | https://github.com/RforMassSpectrometry/MsBackendMsp |
| Bug Reports | https://github.com/RforMassSpectrometry/MsBackendMsp/issues |
See More
| Suggests | testthat, knitr (>= 1.1.0), roxygen2, BiocStyle(>= 2.5.19), rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | MsBackendMsp_1.8.0.tar.gz |
| Windows Binary (x86_64) | MsBackendMsp_1.8.0.zip |
| macOS Binary (x86_64) | MsBackendMsp_1.8.0.tgz |
| macOS Binary (arm64) | MsBackendMsp_1.8.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/MsBackendMsp |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MsBackendMsp |
| Bioc Package Browser | https://code.bioconductor.org/browse/MsBackendMsp/ |
| Package Short Url | https://bioconductor.org/packages/MsBackendMsp/ |
| Package Downloads Report | Download Stats |