davidTiling

Data and analysis scripts for David, Huber et al. yeast tiling array paper

Bioconductor version: 2.7

This package contains the data for the paper by L. David et al. in PNAS 2006 (PMID 16569694): 8 CEL files of Affymetrix genechips, an ExpressionSet object with the raw feature data, a probe annotation data structure for the chip and the yeast genome annotation (GFF file) that was used. In addition, some custom-written analysis functions are provided, as well as R scripts in the scripts directory.

Author: Wolfgang Huber <huber at ebi.ac.uk>, Joern Toedling <toedling at ebi.ac.uk>

Maintainer: Wolfgang Huber <huber at ebi.ac.uk>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("davidTiling")

To cite this package in a publication, start R and enter:

    citation("davidTiling")

Documentation

PDF   Reference Manual

Details

biocViews ExperimentData, Yeast
Depends Biobase(>= 2.5.5), tilingArray, GO.db
Imports
Suggests
System Requirements
License LGPL
URL http://www.ebi.ac.uk/huber
Depends On Me
Imports Me
Suggests Me
Version 1.2.12

Package Downloads

Package Source davidTiling_1.2.12.tar.gz
Windows Binary davidTiling_1.2.12.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary davidTiling_1.2.12.tgz
Package Downloads Report Download Stats

Workflows »

Common Bioconductor workflows include:

 

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Fred Hutchinson Cancer Research Center