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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("RforProteomics")
In most cases, you don't need to download the package archive at all.
RforProteomics
|
This package is for version 2.12 of Bioconductor; for the stable, up-to-date release version, see RforProteomics.
Companion package to the 'Using R and Bioconductor for proteomics data analysis' publication
Bioconductor version: 2.12
This package contains code to illustrate the 'Using R and Bioconductor for proteomics data analysis' manuscript. The vignette describes the code and data needed to reproduce the examples and figures descibed in the paper as well as functions to download the PXD000001 data files.
Author: Laurent Gatto [aut, cre], Sebastian Gibb [ctb]
Maintainer: Laurent Gatto <lg390 at cam.ac.uk>
Citation (from within R,
enter citation("RforProteomics")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("RforProteomics")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("RforProteomics")
| R Script | R for Proteomics | |
| R Script | RforProteomics Bioc2013 poster | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | ExperimentData, MassSpectrometry, MassSpectrometryData, Proteomics |
| Version | 1.0.13 |
| License | Artistic-2.0 |
| Depends | |
| Imports | R.utils, Biobase |
| LinkingTo | |
| Suggests | mzR, MSnbase, xcms, msdata, isobar, MALDIquant, MALDIquantForeign, readBrukerFlexData, rTANDEM, synapter, synapterdata, IPPD, Rdisop, OrgMassSpecR, BRAIN, rols, hpar, GO.db, org.Hs.eg.db, biomaRt, RColorBrewer, ggplot2, reshape2, knitr, biocViews, xtable |
| SystemRequirements | |
| Enhances | cleaver |
| URL | http://lgatto.github.com/RforProteomics/ |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | RforProteomics_1.0.13.tar.gz |
| Windows Binary | RforProteomics_1.0.13.zip |
| Mac OS X 10.6 (Snow Leopard) | RforProteomics_1.0.13.tgz |
| Subversion source | (username/password: readonly) |
| Package Short Url | http://bioconductor.org/packages/RforProteomics/ |
| Package Downloads Report | Download Stats |
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