To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("IPPD")
In most cases, you don't need to download the package archive at all.
IPPD
|
This package is for version 2.12 of Bioconductor; for the stable, up-to-date release version, see IPPD.
Isotopic peak pattern deconvolution for Protein Mass Spectrometry by template matching
Bioconductor version: 2.12
The package provides functionality to extract isotopic peak patterns from raw mass spectra. This is done by fitting a large set of template basis functions to the raw spectrum using either nonnegative least squares or least absolute deviation fittting. The package offers a flexible function which tries to estimate model parameters in a way tailored to the peak shapes in the data. The package also provides functionality to process LCMS runs.
Author: Martin Slawski <ms at cs.uni-saarland.de>, Rene Hussong <rene.hussong at uni.lu>, Matthias Hein <hein at cs.uni-saarland.de>
Maintainer: Martin Slawski <ms at cs.uni-saarland.de>
Citation (from within R,
enter citation("IPPD")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("IPPD")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("IPPD")
| R Script | IPPD Manual | |
| templatedetail.pdf | ||
| templates.pdf | ||
| Reference Manual |
Details
| biocViews | Proteomics, Software |
| Version | 1.8.0 |
| In Bioconductor since | BioC 2.8 (R-2.13) (5 years) |
| License | GPL (version 2 or later) |
| Depends | R (>= 2.12.0), MASS, Matrix, XML, digest, bitops |
| Imports | methods, stats, graphics |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | RforProteomics |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | IPPD_1.8.0.tar.gz |
| Windows Binary | IPPD_1.8.0.zip (32- & 64-bit) |
| Mac OS X 10.6 (Snow Leopard) | IPPD_1.8.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/IPPD/tree/release-2.12 |
| Package Short Url | http://bioconductor.org/packages/IPPD/ |
| Package Downloads Report | Download Stats |
Documentation »
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