To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Mulder2012")

In most cases, you don't need to download the package archive at all.

Mulder2012

This package is for version 2.12 of Bioconductor; for the stable, up-to-date release version, see Mulder2012.

Predicting functional networks and modules of chromatin factors controlling adult stem cell fate from RNA interference screens

Bioconductor version: 2.12

This package provides functions to reproduce results and figures in Mulder K. et. al. published in Nature Cell Biology 2012 and Wang X. et. al. published in PLoS Computational Biology 2012.

Author: Xin Wang <Xin.Wang at cancer.org.uk>, Florian Markowetz <Florian.Markowetz at cancer.org.uk>

Maintainer: Xin Wang <Xin.Wang at cancer.org.uk>

Citation (from within R, enter citation("Mulder2012")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Mulder2012")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Mulder2012")

PDF		Arora2010_PAN.pdf
PDF		Arora2010_sigMod.pdf
PDF	R Script	Main vignette:Posterior association network and enriched functional gene modules inferred from rich phenotypes of gene perturbations
PDF		Mulder2012_enrich.pdf
PDF		Mulder2012_PAN.pdf
PDF		Mulder2012_sigMod.pdf
PDF		Reference Manual
Text		NEWS

Details

biocViews	Bioinformatics, ExperimentData
Version	0.2.3
License	Artistic-2.0
Depends	R (>= 2.14), org.Hs.eg.db, KEGG.db
Imports	igraph, HTSanalyzeR, PANR, RedeR, pvclust, MASS
LinkingTo
Suggests	snow
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	Mulder2012_0.2.3.tar.gz
Windows Binary	Mulder2012_0.2.3.zip
Mac OS X 10.6 (Snow Leopard)	Mulder2012_0.2.3.tgz
Subversion source	(username/password: readonly)
Package Short Url	http://bioconductor.org/packages/Mulder2012/
Package Downloads Report	Download Stats