To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("RedeR")

In most cases, you don't need to download the package archive at all.

RedeR

   

This package is for version 2.12 of Bioconductor; for the stable, up-to-date release version, see RedeR.

Interactive visualization and manipulation of nested networks.

Bioconductor version: 2.12

RedeR is an R-based package combined with a stand-alone Java application for interactive visualization and manipulation of modular structures, nested networks and multiple levels of hierarchical associations. It implements a callback engine by using a low-level R-to-Java interface to build and run common plugins. In this sense, RedeR takes advantage of R to run robust statistics, while the R-to-Java interface bridges the gap between network analysis and visualization.

Author: Mauro Castro, Xin Wang, Florian Markowetz

Maintainer: Mauro Castro <mauro.a.castro at gmail.com>

Citation (from within R, enter citation("RedeR")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("RedeR")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RedeR")

 

PDF fig1.pdf
PDF fig2.pdf
PDF fig3.pdf
PDF fig4.pdf
PDF fig5a.pdf
PDF fig5b.pdf
PDF fig5c.pdf
PDF fig6.pdf
PDF R Script Main vignette: RedeR Overview
PDF   Reference Manual
Text   NEWS

Details

biocViews GraphsAndNetworks, NetworkVisualization, Networks, Software, Visualization
Version 1.8.3
In Bioconductor since BioC 2.9 (R-2.14) (4.5 years)
License GPL (>= 2)
Depends R (>= 2.15), methods, igraph
Imports RCurl, XML, XMLRPC, rJava
LinkingTo
Suggests JavaGD, PANR, pvclust
SystemRequirements
Enhances
URL http://genomebiology.com/2012/13/4/R29
Depends On Me
Imports Me Mulder2012
Suggests Me PANR
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source RedeR_1.8.3.tar.gz
Windows Binary RedeR_1.8.3.zip
Mac OS X 10.6 (Snow Leopard) RedeR_1.8.3.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/RedeR/tree/release-2.12
Package Short Url http://bioconductor.org/packages/RedeR/
Package Downloads Report Download Stats

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