To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("RedeR")
In most cases, you don't need to download the package archive at all.
This package is for version 2.12 of Bioconductor; for the stable, up-to-date release version, see RedeR.
Bioconductor version: 2.12
RedeR is an R-based package combined with a stand-alone Java application for interactive visualization and manipulation of modular structures, nested networks and multiple levels of hierarchical associations. It implements a callback engine by using a low-level R-to-Java interface to build and run common plugins. In this sense, RedeR takes advantage of R to run robust statistics, while the R-to-Java interface bridges the gap between network analysis and visualization.
Author: Mauro Castro, Xin Wang, Florian Markowetz
Maintainer: Mauro Castro <mauro.a.castro at gmail.com>
Citation (from within R,
enter citation("RedeR")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("RedeR")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("RedeR")
fig1.pdf | ||
fig2.pdf | ||
fig3.pdf | ||
fig4.pdf | ||
fig5a.pdf | ||
fig5b.pdf | ||
fig5c.pdf | ||
fig6.pdf | ||
R Script | Main vignette: RedeR Overview | |
Reference Manual | ||
Text | NEWS |
biocViews | GraphsAndNetworks, NetworkVisualization, Networks, Software, Visualization |
Version | 1.8.3 |
In Bioconductor since | BioC 2.9 (R-2.14) (4.5 years) |
License | GPL (>= 2) |
Depends | R (>= 2.15), methods, igraph |
Imports | RCurl, XML, XMLRPC, rJava |
LinkingTo | |
Suggests | JavaGD, PANR, pvclust |
SystemRequirements | |
Enhances | |
URL | http://genomebiology.com/2012/13/4/R29 |
Depends On Me | |
Imports Me | Mulder2012 |
Suggests Me | PANR |
Build Report |
Follow Installation instructions to use this package in your R session.
Package Source | RedeR_1.8.3.tar.gz |
Windows Binary | RedeR_1.8.3.zip |
Mac OS X 10.6 (Snow Leopard) | RedeR_1.8.3.tgz |
Subversion source | (username/password: readonly) |
Git source | https://github.com/Bioconductor-mirror/RedeR/tree/release-2.12 |
Package Short Url | http://bioconductor.org/packages/RedeR/ |
Package Downloads Report | Download Stats |
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