To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("oligoClasses")

In most cases, you don't need to download the package archive at all.

oligoClasses

This package is for version 2.12 of Bioconductor; for the stable, up-to-date release version, see oligoClasses.

Classes for high-throughput arrays supported by oligo and crlmm

Bioconductor version: 2.12

This package contains class definitions, validity checks, and initialization methods for classes used by the oligo and crlmm packages.

Author: Benilton Carvalho and Robert Scharpf

Maintainer: Benilton Carvalho <Benilton.Carvalho at cancer.org.uk> and Robert Scharpf <rscharpf at jhsph.edu>

Citation (from within R, enter citation("oligoClasses")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("oligoClasses")

Documentation


PDF		Reference Manual
Text		NEWS

Details

biocViews	Infrastructure, Software
Version	1.22.0
In Bioconductor since	BioC 2.1 (R-2.6) (8.5 years)
License	GPL (>= 2)
Depends	R (>= 2.14), BiocGenerics(>= 0.3.2)
Imports	BiocGenerics, Biobase(>= 2.17.8), methods, graphics, IRanges(>= 1.13.30), GenomicRanges, Biostrings(>= 2.23.6), affyio(>= 1.23.2), ff, foreach, BiocInstaller, utils
LinkingTo
Suggests	RSQLite, hapmapsnp5, hapmapsnp6, pd.genomewidesnp.6, pd.genomewidesnp.5, pd.mapping50k.hind240, pd.mapping50k.xba240, pd.mapping250k.sty, pd.mapping250k.nsp, genomewidesnp6Crlmm(>= 1.0.7), genomewidesnp5Crlmm(>= 1.0.6), crlmm, SNPchip, VanillaICE, RUnit, human370v1cCrlmm
SystemRequirements
Enhances	doMC, doMPI, doSNOW, doParallel, doRedis
URL
Depends On Me	cn.farms, crlmm, mBPCR, oligo, pd.081229.hg18.promoter.medip.hx1, pd.2006.07.18.hg18.refseq.promoter, pd.2006.07.18.mm8.refseq.promoter, pd.2006.10.31.rn34.refseq.promoter, pd.ag, pd.aragene.1.0.st, pd.aragene.1.1.st, pd.atdschip.tiling, pd.ath1.121501, pd.barley1, pd.bovgene.1.0.st, pd.bovgene.1.1.st, pd.bovine, pd.bsubtilis, pd.cangene.1.0.st, pd.cangene.1.1.st, pd.canine, pd.canine.2, pd.celegans, pd.charm.hg18.example, pd.chicken, pd.citrus, pd.cotton, pd.cyngene.1.0.st, pd.cyngene.1.1.st, pd.cyrgene.1.0.st, pd.cyrgene.1.1.st, pd.cytogenetics.array, pd.drosgenome1, pd.drosophila.2, pd.e.coli.2, pd.ecoli, pd.ecoli.asv2, pd.equgene.1.0.st, pd.equgene.1.1.st, pd.feinberg.hg18.me.hx1, pd.feinberg.mm8.me.hx1, pd.felgene.1.0.st, pd.felgene.1.1.st, pd.genomewidesnp.5, pd.genomewidesnp.6, pd.hc.g110, pd.hg.focus, pd.hg.u133.plus.2, pd.hg.u133a, pd.hg.u133a.2, pd.hg.u133a.tag, pd.hg.u133b, pd.hg.u219, pd.hg.u95a, pd.hg.u95av2, pd.hg.u95b, pd.hg.u95c, pd.hg.u95d, pd.hg.u95e, pd.hg18.60mer.expr, pd.ht.hg.u133.plus.pm, pd.ht.hg.u133a, pd.ht.mg.430a, pd.hu6800, pd.huex.1.0.st.v2, pd.hugene.1.0.st.v1, pd.hugene.1.1.st.v1, pd.hugene.2.0.st, pd.hugene.2.1.st, pd.maize, pd.mapping250k.nsp, pd.mapping250k.sty, pd.mapping50k.hind240, pd.mapping50k.xba240, pd.medicago, pd.mg.u74a, pd.mg.u74av2, pd.mg.u74b, pd.mg.u74bv2, pd.mg.u74c, pd.mg.u74cv2, pd.mirna.1.0, pd.mirna.2.0, pd.mirna.3.0, pd.mirna.3.1, pd.moe430a, pd.moe430b, pd.moex.1.0.st.v1, pd.mogene.1.0.st.v1, pd.mogene.1.1.st.v1, pd.mogene.2.0.st, pd.mogene.2.1.st, pd.mouse430.2, pd.mouse430a.2, pd.mu11ksuba, pd.mu11ksubb, pd.ovigene.1.0.st, pd.ovigene.1.1.st, pd.pae.g1a, pd.plasmodium.anopheles, pd.poplar, pd.porcine, pd.porgene.1.0.st, pd.porgene.1.1.st, pd.rae230a, pd.rae230b, pd.raex.1.0.st.v1, pd.ragene.1.0.st.v1, pd.ragene.1.1.st.v1, pd.ragene.2.0.st, pd.ragene.2.1.st, pd.rat230.2, pd.rcngene.1.1.st, pd.rg.u34a, pd.rg.u34b, pd.rg.u34c, pd.rhegene.1.0.st, pd.rhegene.1.1.st, pd.rhesus, pd.rice, pd.rjpgene.1.1.st, pd.rn.u34, pd.s.aureus, pd.soybean, pd.soygene.1.1.st, pd.sugar.cane, pd.tomato, pd.u133.x3p, pd.vitis.vinifera, pd.wheat, pd.x.laevis.2, pd.x.tropicalis, pd.xenopus.laevis, pd.yeast.2, pd.yg.s98, pd.zebgene.1.0.st, pd.zebgene.1.1.st, pd.zebrafish, waveTiling
Imports Me	affycoretools, charm, frma, ITALICS, MinimumDistance, SNPchip, VanillaICE
Suggests Me	BiocGenerics, hapmapsnp6
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	oligoClasses_1.22.0.tar.gz
Windows Binary	oligoClasses_1.22.0.zip
Mac OS X 10.6 (Snow Leopard)	oligoClasses_1.22.0.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/oligoClasses/tree/release-2.12
Package Short Url	http://bioconductor.org/packages/oligoClasses/
Package Downloads Report	Download Stats

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