To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("VanillaICE")

In most cases, you don't need to download the package archive at all.

VanillaICE

This package is for version 2.12 of Bioconductor; for the stable, up-to-date release version, see VanillaICE.

A Hidden Markov Model for high throughput genotyping arrays

Bioconductor version: 2.12

Hidden Markov Models for characterizing chromosomal alterations in high throughput SNP arrays

Author: Robert Scharpf <rscharpf at jhsph.edu>, Kevin Scharpf, and Ingo Ruczinski <ingo at jhsph.edu>

Maintainer: Robert Scharpf <rscharpf at jhsph.edu>

Citation (from within R, enter citation("VanillaICE")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("VanillaICE")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("VanillaICE")

biocViews	Bioinformatics, CopyNumberVariants, GeneticVariability, SNP, Software, Visualization
Version	1.22.0
In Bioconductor since	BioC 2.1 (R-2.6) (8.5 years)
License	LGPL-2
Depends	R (>= 2.14.0)
Imports	stats, utils, methods, Biobase, oligoClasses(>= 1.21.12), lattice, IRanges(>= 1.13.22), grid, msm, iterators, foreach, GenomicRanges, matrixStats
LinkingTo
Suggests	genomewidesnp6Crlmm(>= 1.0.7), hapmapsnp6, RColorBrewer, genefilter, RSQLite, foreach, RUnit, pd.mapping50k.hind240, SNPchip(>= 2.5.7), doSNOW
SystemRequirements
Enhances	DNAcopy, crlmm(>= 1.17.14)
URL
Depends On Me
Imports Me	MinimumDistance
Suggests Me	oligoClasses
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	VanillaICE_1.22.0.tar.gz
Windows Binary	VanillaICE_1.22.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	VanillaICE_1.22.0.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/VanillaICE/tree/release-2.12
Package Short Url	http://bioconductor.org/packages/VanillaICE/
Package Downloads Report	Download Stats

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