To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("minfi")

In most cases, you don't need to download the package archive at all.

minfi

This package is for version 2.12 of Bioconductor; for the stable, up-to-date release version, see minfi.

Analyze Illumina's 450k methylation arrays

Bioconductor version: 2.12

Tools for analyzing and visualizing Illumina's 450k array data

Author: Kasper Daniel Hansen, Martin Aryee

Maintainer: Kasper Daniel Hansen <khansen at jhsph.edu>

Citation (from within R, enter citation("minfi")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("minfi")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("minfi")

biocViews	DNAMethylation, DataImport, Microarray, Preprocessing, QualityControl, Software, TwoChannel
Version	1.6.0
In Bioconductor since	BioC 2.9 (R-2.14) (4.5 years)
License	Artistic-2.0
Depends	methods, BiocGenerics(>= 0.3.2), Biobase(>= 2.17.8), lattice, reshape, GenomicRanges, Biostrings, utils
Imports	BiocGenerics, beanplot, RColorBrewer, nor1mix, siggenes, limma, preprocessCore, illuminaio, matrixStats, mclust
LinkingTo
Suggests	IlluminaHumanMethylation450kmanifest(>= 0.2.0), minfiData(>= 0.2.0), RUnit, digest
SystemRequirements
Enhances
URL
Depends On Me	IlluminaHumanMethylation27kmanifest, IlluminaHumanMethylation450kannotation.ilmn.v1.2, IlluminaHumanMethylation450kmanifest, minfiData
Imports Me	methylumi
Suggests Me
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	minfi_1.6.0.tar.gz
Windows Binary	minfi_1.6.0.zip
Mac OS X 10.6 (Snow Leopard)	minfi_1.6.0.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/minfi/tree/release-2.12
Package Short Url	http://bioconductor.org/packages/minfi/
Package Downloads Report	Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Please read the posting guide. Post questions about Bioconductor to one of the following locations: