To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("DiffBind")
In most cases, you don't need to download the package archive at all.
This package is for version 2.12 of Bioconductor; for the stable, up-to-date release version, see DiffBind.
Bioconductor version: 2.12
Compute differentially bound sites from multiple ChIP-seq experiments using affinity (quantitative) data. Also enables occupancy (overlap) analysis and plotting functions.
Author: Rory Stark <rory.stark at cruk.cam.ac.uk>, Gordon Brown <gordon.brown at cruk.cam.ac.uk>
Maintainer: Rory Stark <rory.stark at cruk.cam.ac.uk>
Citation (from within R,
enter citation("DiffBind")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("DiffBind")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("DiffBind")
R Script | DiffBind User's Guide | |
Reference Manual | ||
Text | NEWS |
biocViews | Bioinformatics, ChIPseq, HighThroughputSequencing, Software |
Version | 1.6.2 |
In Bioconductor since | BioC 2.9 (R-2.14) (4.5 years) |
License | Artistic-2.0 |
Depends | R (>= 2.14.0), GenomicRanges |
Imports | RColorBrewer, amap, edgeR(>= 2.3.58), gplots, DESeq, grDevices, stats, utils, IRanges, zlibbioc |
LinkingTo | Rsamtools |
Suggests | DESeq, Rsamtools |
SystemRequirements | |
Enhances | rgl, parallel |
URL | |
Depends On Me | MMDiff |
Imports Me | |
Suggests Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Package Source | DiffBind_1.6.2.tar.gz |
Windows Binary | DiffBind_1.6.2.zip (32- & 64-bit) |
Mac OS X 10.6 (Snow Leopard) | DiffBind_1.6.2.tgz |
Subversion source | (username/password: readonly) |
Git source | https://github.com/Bioconductor-mirror/DiffBind/tree/release-2.12 |
Package Short Url | http://bioconductor.org/packages/DiffBind/ |
Package Downloads Report | Download Stats |
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