To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("CellNOptR")

In most cases, you don't need to download the package archive at all.

CellNOptR

This package is for version 2.12 of Bioconductor; for the stable, up-to-date release version, see CellNOptR.

Training of boolean logic models of signalling networks using prior knowledge networks and perturbation data.

Bioconductor version: 2.12

This package does optimisation of boolean logic networks of signalling pathways based on a previous knowledge network and a set of data upon perturbation of the nodes in the network.

Author: T.Cokelaer, F.Eduati, A.MacNamara, S.Schrier, C.Terfve

Maintainer: T.Cokelaer <cokelaer at ebi.ac.uk>

Citation (from within R, enter citation("CellNOptR")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("CellNOptR")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CellNOptR")

PDF		CellNOptR0_1flowchart.pdf
PDF		Fig2.pdf
PDF		Fig3.pdf
PDF		Fig4.pdf
PDF		Fig6.pdf
PDF		Fig7.pdf
PDF		Fig8.pdf
PDF	R Script	Main vignette:Playing with networks using CellNOptR
PDF		Reference Manual
Text		NEWS

Details

biocViews	Bioinformatics, CellBasedAssays, CellBiology, Proteomics, Software, TimeCourse
Version	1.6.0
In Bioconductor since	BioC 2.9 (R-2.14) (4.5 years)
License	GPL-2
Depends	R (>= 2.15.0), RBGL, graph, methods, hash, ggplot2, RCurl, Rgraphviz
Imports
LinkingTo
Suggests	RUnit, BiocGenerics, igraph
SystemRequirements	Graphviz version >= 2.2
Enhances
URL
Depends On Me	CNORdt, CNORfeeder, CNORfuzzy, CNORode
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	CellNOptR_1.6.0.tar.gz
Windows Binary	CellNOptR_1.6.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	CellNOptR_1.6.0.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/CellNOptR/tree/release-2.12
Package Short Url	http://bioconductor.org/packages/CellNOptR/
Package Downloads Report	Download Stats