To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("CNORfuzzy")

In most cases, you don't need to download the package archive at all.

CNORfuzzy

This package is for version 2.12 of Bioconductor; for the stable, up-to-date release version, see CNORfuzzy.

Addon to CellNOptR: Fuzzy Logic

Bioconductor version: 2.12

This package is an extension to CellNOptR. It contains additional functionality needed to simulate and train a prior knowledge network to experimental data using constrained fuzzy logic (cFL, rather than Boolean logic as is the case in CellNOptR). Additionally, this package will contain functions to use for the compilation of multiple optimization results (either Boolean or cFL).

Author: M. Morris, T. Cokelaer

Maintainer: T. Cokelaer <cokelaer at ebi.ac.uk>

Citation (from within R, enter citation("CNORfuzzy")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("CNORfuzzy")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CNORfuzzy")

PDF		CNORfuzzy-vignette-FullAnalysis.pdf
PDF		CNORfuzzy-vignette-FullAnalysis2.pdf
PDF		CNORfuzzy-vignette-FullAnalysis3.pdf
PDF	R Script	Main vignette:Playing with networks using CNORfuzzyl
PDF		tf1.pdf
PDF		tf2.pdf
PDF		Reference Manual
Text		NEWS

Details

biocViews	Software
Version	1.2.0
In Bioconductor since	BioC 2.11 (R-2.15) (3.5 years)
License	GPL-2
Depends	R (>= 2.15.0), CellNOptR(>= 1.4.0), nloptr (>= 0.8.5)
Imports
LinkingTo
Suggests	xtable, Rgraphviz, RUnit, BiocGenerics
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	CNORfuzzy_1.2.0.tar.gz
Windows Binary	CNORfuzzy_1.2.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	CNORfuzzy_1.2.0.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/CNORfuzzy/tree/release-2.12
Package Short Url	http://bioconductor.org/packages/CNORfuzzy/
Package Downloads Report	Download Stats