| Back to Workflows build report for BioC 3.22 |
This page was generated on 2025-11-25 16:30 -0500 (Tue, 25 Nov 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" | 4875 |
| merida1 | macOS 12.7.6 Monterey | x86_64 | 4.5.2 Patched (2025-11-05 r88990) -- "[Not] Part in a Rumble" | 4656 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 17/29 | Hostname | OS / Arch | INSTALL | BUILD | ||||||||
| methylationArrayAnalysis 1.34.0 (landing page) Jovana Maksimovic
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | ||||||||
| merida1 | macOS 12.7.6 Monterey / x86_64 | OK | ERROR | |||||||||
|
To the developers/maintainers of the methylationArrayAnalysis package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: methylationArrayAnalysis |
| Version: 1.34.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data methylationArrayAnalysis |
| StartedAt: 2025-11-25 13:16:45 -0500 (Tue, 25 Nov 2025) |
| EndedAt: 2025-11-25 13:27:05 -0500 (Tue, 25 Nov 2025) |
| EllapsedTime: 619.5 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data methylationArrayAnalysis
###
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* checking for file ‘methylationArrayAnalysis/DESCRIPTION’ ... OK
* preparing ‘methylationArrayAnalysis’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘methylationArrayAnalysis.Rmd’ using rmarkdown
2025-11-25 13:23:52.757 R[3127:52083789] XType: com.apple.fonts is not accessible.
2025-11-25 13:23:52.758 R[3127:52083789] XType: XTFontStaticRegistry is enabled.
Quitting from methylationArrayAnalysis.Rmd:514-523 [gentracks]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `if (file == "" || length(file) == 0) ...`:
! missing value where TRUE/FALSE needed
---
Backtrace:
▆
1. └─Gviz::UcscTrack(...)
2. └─Gviz:::.cacheTracks(...)
3. ├─Gviz::.doCache(...)
4. │ ├─BiocGenerics::eval(expression, envir = callEnv)
5. │ └─base::eval(expression, envir = callEnv)
6. │ └─base::eval(expression, envir = callEnv)
7. ├─rtracklayer::trackNames(ucscTableQuery(session))
8. └─rtracklayer::trackNames(ucscTableQuery(session))
9. └─rtracklayer (local) .local(object, ...)
10. └─rtracklayer:::ucscTableTracks(object@genome)
11. └─rtracklayer:::rtracklayerGET(url, query = list(db = genome, hgta_group = "allTracks"))
12. └─rtracklayer:::htmlParse(content(response, as = "text"))
13. ├─base::suppressWarnings(...)
14. │ └─base::withCallingHandlers(...)
15. └─XML::htmlTreeParse(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'methylationArrayAnalysis.Rmd' failed with diagnostics:
missing value where TRUE/FALSE needed
--- failed re-building ‘methylationArrayAnalysis.Rmd’
SUMMARY: processing the following file failed:
‘methylationArrayAnalysis.Rmd’
Error: Vignette re-building failed.
Execution halted