| Back to Workflows build report for BioC 3.22 |
This page was generated on 2025-11-25 16:30 -0500 (Tue, 25 Nov 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" | 4875 |
| merida1 | macOS 12.7.6 Monterey | x86_64 | 4.5.2 Patched (2025-11-05 r88990) -- "[Not] Part in a Rumble" | 4656 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 11/29 | Hostname | OS / Arch | INSTALL | BUILD | ||||||||
| fluentGenomics 1.22.0 (landing page) Stuart Lee
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | ||||||||
| merida1 | macOS 12.7.6 Monterey / x86_64 | OK | ERROR | |||||||||
|
To the developers/maintainers of the fluentGenomics package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: fluentGenomics |
| Version: 1.22.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data fluentGenomics |
| StartedAt: 2025-11-25 13:10:27 -0500 (Tue, 25 Nov 2025) |
| EndedAt: 2025-11-25 13:13:53 -0500 (Tue, 25 Nov 2025) |
| EllapsedTime: 205.8 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data fluentGenomics
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* checking for file ‘fluentGenomics/DESCRIPTION’ ... OK
* preparing ‘fluentGenomics’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘fluentGenomics.Rmd’ using rmarkdown
2025-11-25 13:13:49.791 R[91774:52051201] XType: com.apple.fonts is not accessible.
2025-11-25 13:13:49.856 R[91774:52051201] XType: XTFontStaticRegistry is enabled.
Quitting from fluentGenomics.Rmd:365-369 [de-genes]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! unable to find an inherited method for function 'select' for signature 'x = "GRanges"'
---
Backtrace:
▆
1. ├─de_genes %>% filter(padj < 0.01) %>% ...
2. └─AnnotationDbi::select(...)
3. └─methods (local) `<fn>`(`<list>`, `<stndrdGn>`, `<env>`)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'fluentGenomics.Rmd' failed with diagnostics:
unable to find an inherited method for function 'select' for signature 'x = "GRanges"'
--- failed re-building ‘fluentGenomics.Rmd’
SUMMARY: processing the following file failed:
‘fluentGenomics.Rmd’
Error: Vignette re-building failed.
Execution halted