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### Running command:
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###   /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:msdata.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings msdata_0.48.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.21-data-experiment/meat/msdata.Rcheck’
* using R version 4.5.1 (2025-06-13)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.3 LTS
* using session charset: UTF-8
* checking for file ‘msdata/DESCRIPTION’ ... OK
* this is package ‘msdata’ version ‘0.48.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘msdata’ can be installed ... OK
* checking installed package size ... INFO
  installed size is 477.9Mb
  sub-directories of 1Mb or more:
    CE-MS              1.2Mb
    TripleTOF-SWATH   51.3Mb
    cdf                2.0Mb
    fticr-mzML         6.2Mb
    ident              1.4Mb
    iontrap            8.5Mb
    lockmass           2.6Mb
    microtofq          9.0Mb
    mzid               3.9Mb
    proteomics       355.8Mb
    quant              4.1Mb
    sciex             31.6Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) proteomics.Rd:37-65: Lost braces in \itemize; meant \describe ?
checkRd: (-1) proteomics.Rd:68-74: Lost braces in \itemize; meant \describe ?
checkRd: (-1) proteomics.Rd:77-89: Lost braces in \itemize; meant \describe ?
checkRd: (-1) proteomics.Rd:92-98: Lost braces
    92 |     \item{MRM-standmix-5.mzML.gz}:{Sample from mouse brain acquired by
       |                                   ^
checkRd: (-1) sciexdata.Rd:26-29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sciexdata.Rd:31-34: Lost braces in \itemize; meant \describe ?
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
         user system elapsed
msdata 13.002   0.57  13.574
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.21-data-experiment/meat/msdata.Rcheck/00check.log’
for details.

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###
### Running command:
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###   /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD INSTALL msdata
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* installing to library ‘/home/biocbuild/bbs-3.21-bioc/R/site-library’
* installing *source* package ‘msdata’ ...
** this is package ‘msdata’ version ‘0.48.0’
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (msdata)