| Back to Build/check report for BioC 3.22 experimental data |
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This page was generated on 2025-11-18 15:41 -0500 (Tue, 18 Nov 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" | 4786 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 229/435 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
| mammaPrintData 1.46.0 (landing page) Luigi Marchionni
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK |  | |||||||
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To the developers/maintainers of the mammaPrintData package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: mammaPrintData |
| Version: 1.46.0 |
| Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD INSTALL mammaPrintData |
| StartedAt: 2025-11-18 10:55:45 -0500 (Tue, 18 Nov 2025) |
| EndedAt: 2025-11-18 10:56:50 -0500 (Tue, 18 Nov 2025) |
| EllapsedTime: 65.0 seconds |
| RetCode: 0 |
| Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD INSTALL mammaPrintData ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.22-bioc/R/site-library’ * installing *source* package ‘mammaPrintData’ ... ** this is package ‘mammaPrintData’ version ‘1.46.0’ ** using staged installation ** data ** inst ** help *** installing help indices ** building package indices # Bootstrapping renv 0.17.3 -------------------------------------------------- * Downloading renv 0.17.3 ... OK * Installing renv 0.17.3 ... Done! Error installing renv: ====================== * installing *source* package ‘renv’ ... ** this is package ‘renv’ version ‘0.17.3’ ** package ‘renv’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path ERROR: hard-coded installation path: please report to the package maintainer and use ‘--no-staged-install’ * removing ‘/home/biocbuild/.cache/R/renv/library/mammaPrintData-4827d13d/R-4.5/x86_64-pc-linux-gnu/renv’ Warning messages: 1: In system2(r, args, stdout = TRUE, stderr = TRUE) : running command ''/home/biocbuild/bbs-3.22-bioc/R/bin/R' --vanilla CMD INSTALL --no-multiarch -l '/home/biocbuild/.cache/R/renv/library/mammaPrintData-4827d13d/R-4.5/x86_64-pc-linux-gnu' '/tmp/Rtmp5GAEKR/renv_0.17.3.tar.gz' 2>&1' had status 1 2: Failed to find an renv installation: the project will not be loaded. Use `renv::activate()` to re-initialize the project. ** installing vignettes ** testing if installed package can be loaded from temporary location # Bootstrapping renv 0.17.3 -------------------------------------------------- * Downloading renv 0.17.3 ... OK * Installing renv 0.17.3 ... Done! Error installing renv: ====================== * installing *source* package ‘renv’ ... ** this is package ‘renv’ version ‘0.17.3’ ** package ‘renv’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path ERROR: hard-coded installation path: please report to the package maintainer and use ‘--no-staged-install’ * removing ‘/home/biocbuild/.cache/R/renv/library/mammaPrintData-4827d13d/R-4.5/x86_64-pc-linux-gnu/renv’ Warning messages: 1: In system2(r, args, stdout = TRUE, stderr = TRUE) : running command ''/home/biocbuild/bbs-3.22-bioc/R/bin/R' --vanilla CMD INSTALL --no-multiarch -l '/home/biocbuild/.cache/R/renv/library/mammaPrintData-4827d13d/R-4.5/x86_64-pc-linux-gnu' '/tmp/RtmpCRVxsT/renv_0.17.3.tar.gz' 2>&1' had status 1 2: Failed to find an renv installation: the project will not be loaded. Use `renv::activate()` to re-initialize the project. ** testing if installed package can be loaded from final location # Bootstrapping renv 0.17.3 -------------------------------------------------- * Downloading renv 0.17.3 ... OK * Installing renv 0.17.3 ... Done! * Successfully installed and loaded renv 0.17.3. ℹ Using R 4.5.2 (lockfile was generated with R 4.2.3) Retrieving 'http://lib.stat.cmu.edu/R/CRAN/src/contrib/BiocManager_1.30.27.tar.gz' ... OK [downloaded 734.9 Kb in 5.6 seconds] Installing BiocManager [1.30.27] ... OK [built from source in 2 seconds] Moving BiocManager [1.30.27] into the cache ... OK [moved to cache in 4.5 milliseconds] * Installed 1 package in 21 seconds. Warning message: This project is configured to use Bioconductor 3.15, which is not compatible with R 4.5.2. Use 'renv::init(bioconductor = "3.15")' to re-initialize this project with the appropriate Bioconductor release. ** testing if installed package keeps a record of temporary installation path * DONE (mammaPrintData)