Back to Build/check report for BioC 3.20 experimental data
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This page was generated on 2024-12-19 15:42 -0500 (Thu, 19 Dec 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.1 LTS)x86_644.4.2 (2024-10-31) -- "Pile of Leaves" 4743
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 121/431HostnameOS / ArchINSTALLBUILDCHECK
ewceData 1.14.0  (landing page)
Alan Murphy
Snapshot Date: 2024-12-19 07:30 -0500 (Thu, 19 Dec 2024)
git_url: https://git.bioconductor.org/packages/ewceData
git_branch: RELEASE_3_20
git_last_commit: 05ad00f
git_last_commit_date: 2024-10-29 09:52:23 -0500 (Tue, 29 Oct 2024)
nebbiolo2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published


CHECK results for ewceData on nebbiolo2

To the developers/maintainers of the ewceData package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: ewceData
Version: 1.14.0
Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:ewceData.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings ewceData_1.14.0.tar.gz
StartedAt: 2024-12-19 12:27:35 -0500 (Thu, 19 Dec 2024)
EndedAt: 2024-12-19 12:33:32 -0500 (Thu, 19 Dec 2024)
EllapsedTime: 357.4 seconds
RetCode: 0
Status:   OK  
CheckDir: ewceData.Rcheck
Warnings: 0

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:ewceData.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings ewceData_1.14.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.20-data-experiment/meat/ewceData.Rcheck’
* using R version 4.4.2 (2024-10-31)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
    GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
* running under: Ubuntu 24.04.1 LTS
* using session charset: UTF-8
* checking for file ‘ewceData/DESCRIPTION’ ... OK
* this is package ‘ewceData’ version ‘1.14.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib:
  cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES'
 OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ewceData’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

ewceData.Rcheck/00install.out

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### Running command:
###
###   /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD INSTALL ewceData
###
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* installing to library ‘/home/biocbuild/bbs-3.20-bioc/R/site-library’
* installing *source* package ‘ewceData’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ewceData)

Tests output


Example timings

ewceData.Rcheck/ewceData-Ex.timings

nameusersystemelapsed
all_hgnc1.6330.0511.974
all_hgnc_wtEnsembl0.7510.1010.931
all_mgi0.7010.0570.836
all_mgi_wtEnsembl0.7210.0470.861
alzh_gwas_top100000
cortex_mrna2.3170.3312.737
ctd2.9920.0983.170
ensembl_transcript_lengths_GCcontent0.9430.0821.105
ewceData-Package0.9560.1221.158
example_genelist0.6150.0220.718
hpsd_genes0.6200.0200.718
hypothalamus_mrna0.8720.0661.017
id_genes0.6420.0390.760
mgi_synonym_data1.0330.0511.162
mouse_to_human_homologs0.7030.0610.843
rbfox_genes0.6720.0220.772
schiz_genes0.6580.0190.756
tt_alzh0.9150.0961.091
tt_alzh_BA360.7010.0390.818
tt_alzh_BA440.6810.0230.782