Back to Build/check report for BioC 3.20 experimental data |
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This page was generated on 2024-12-19 15:42 -0500 (Thu, 19 Dec 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4743 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 121/431 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
ewceData 1.14.0 (landing page) Alan Murphy
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | ||||||||
To the developers/maintainers of the ewceData package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: ewceData |
Version: 1.14.0 |
Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:ewceData.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings ewceData_1.14.0.tar.gz |
StartedAt: 2024-12-19 12:27:35 -0500 (Thu, 19 Dec 2024) |
EndedAt: 2024-12-19 12:33:32 -0500 (Thu, 19 Dec 2024) |
EllapsedTime: 357.4 seconds |
RetCode: 0 |
Status: OK |
CheckDir: ewceData.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:ewceData.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings ewceData_1.14.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.20-data-experiment/meat/ewceData.Rcheck’ * using R version 4.4.2 (2024-10-31) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 * running under: Ubuntu 24.04.1 LTS * using session charset: UTF-8 * checking for file ‘ewceData/DESCRIPTION’ ... OK * this is package ‘ewceData’ version ‘1.14.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib: cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES' OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘ewceData’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: OK
ewceData.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD INSTALL ewceData ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.20-bioc/R/site-library’ * installing *source* package ‘ewceData’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ewceData)
ewceData.Rcheck/ewceData-Ex.timings
name | user | system | elapsed | |
all_hgnc | 1.633 | 0.051 | 1.974 | |
all_hgnc_wtEnsembl | 0.751 | 0.101 | 0.931 | |
all_mgi | 0.701 | 0.057 | 0.836 | |
all_mgi_wtEnsembl | 0.721 | 0.047 | 0.861 | |
alzh_gwas_top100 | 0 | 0 | 0 | |
cortex_mrna | 2.317 | 0.331 | 2.737 | |
ctd | 2.992 | 0.098 | 3.170 | |
ensembl_transcript_lengths_GCcontent | 0.943 | 0.082 | 1.105 | |
ewceData-Package | 0.956 | 0.122 | 1.158 | |
example_genelist | 0.615 | 0.022 | 0.718 | |
hpsd_genes | 0.620 | 0.020 | 0.718 | |
hypothalamus_mrna | 0.872 | 0.066 | 1.017 | |
id_genes | 0.642 | 0.039 | 0.760 | |
mgi_synonym_data | 1.033 | 0.051 | 1.162 | |
mouse_to_human_homologs | 0.703 | 0.061 | 0.843 | |
rbfox_genes | 0.672 | 0.022 | 0.772 | |
schiz_genes | 0.658 | 0.019 | 0.756 | |
tt_alzh | 0.915 | 0.096 | 1.091 | |
tt_alzh_BA36 | 0.701 | 0.039 | 0.818 | |
tt_alzh_BA44 | 0.681 | 0.023 | 0.782 | |