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This page was generated on 2025-02-06 15:42 -0500 (Thu, 06 Feb 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.1 LTS)x86_644.4.2 (2024-10-31) -- "Pile of Leaves" 4753
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 322/431HostnameOS / ArchINSTALLBUILDCHECK
RforProteomics 1.44.0  (landing page)
Laurent Gatto
Snapshot Date: 2025-02-06 07:30 -0500 (Thu, 06 Feb 2025)
git_url: https://git.bioconductor.org/packages/RforProteomics
git_branch: RELEASE_3_20
git_last_commit: 7fd9ac9
git_last_commit_date: 2024-10-29 09:35:29 -0500 (Tue, 29 Oct 2024)
nebbiolo2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    ERROR  skipped

BUILD results for RforProteomics on nebbiolo2

To the developers/maintainers of the RforProteomics package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: RforProteomics
Version: 1.44.0
Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data RforProteomics
StartedAt: 2025-02-06 11:33:08 -0500 (Thu, 06 Feb 2025)
EndedAt: 2025-02-06 11:34:28 -0500 (Thu, 06 Feb 2025)
EllapsedTime: 80.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data RforProteomics
###
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* checking for file ‘RforProteomics/DESCRIPTION’ ... OK
* preparing ‘RforProteomics’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘RProtVis.Rmd’ using rmarkdown

Quitting from lines 172-202 [makemadata] (RProtVis.Rmd)
Error: processing vignette 'RProtVis.Rmd' failed with diagnostics:
Can't access URL(s):
 
--- failed re-building ‘RProtVis.Rmd’

--- re-building ‘RforProteomics.Rmd’ using rmarkdown
starting worker pid=2669732 on localhost:11659 at 11:34:24.286
starting worker pid=2669731 on localhost:11659 at 11:34:24.292
Loading required package: mzID
Loading required package: mzID
loaded mzID and set parent environment
loaded mzID and set parent environment
reading 55merge_omssa.mzid...
reading 55merge_tandem.mzid...
55merge_omssa.mzid DONE!
55merge_tandem.mzid DONE!

Quitting from lines 384-392 [downloadmztab] (RforProteomics.Rmd)
Error: processing vignette 'RforProteomics.Rmd' failed with diagnostics:
Can't access URL(s):
 
--- failed re-building ‘RforProteomics.Rmd’

SUMMARY: processing the following files failed:
  ‘RProtVis.Rmd’ ‘RforProteomics.Rmd’

Error: Vignette re-building failed.
Execution halted