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This page was generated on 2025-12-30 15:41 -0500 (Tue, 30 Dec 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.3 LTS)x86_644.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 4883
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 327/435HostnameOS / ArchINSTALLBUILDCHECK
RforProteomics 1.48.0  (landing page)
Laurent Gatto
Snapshot Date: 2025-12-30 07:30 -0500 (Tue, 30 Dec 2025)
git_url: https://git.bioconductor.org/packages/RforProteomics
git_branch: RELEASE_3_22
git_last_commit: eef7998
git_last_commit_date: 2025-10-29 09:33:45 -0500 (Wed, 29 Oct 2025)
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    ERROR  skipped

BUILD results for RforProteomics on nebbiolo2

To the developers/maintainers of the RforProteomics package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: RforProteomics
Version: 1.48.0
Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data RforProteomics
StartedAt: 2025-12-30 11:37:49 -0500 (Tue, 30 Dec 2025)
EndedAt: 2025-12-30 11:40:08 -0500 (Tue, 30 Dec 2025)
EllapsedTime: 138.8 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data RforProteomics
###
##############################################################################
##############################################################################


* checking for file ‘RforProteomics/DESCRIPTION’ ... OK
* preparing ‘RforProteomics’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘RProtVis.Rmd’ using rmarkdown
--- finished re-building ‘RProtVis.Rmd’

--- re-building ‘RforProteomics.Rmd’ using rmarkdown
starting worker pid=4170509 on localhost:11782 at 11:39:58.959
starting worker pid=4170508 on localhost:11782 at 11:39:58.976
Loading required package: mzID
Loading required package: mzID
loaded mzID and set parent environment
loaded mzID and set parent environment
reading 55merge_omssa.mzid...
reading 55merge_tandem.mzid...
55merge_omssa.mzid DONE!
55merge_tandem.mzid DONE!

Quitting from RforProteomics.Rmd:391-400 [downloadmztab]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `.util_download()`:
! bfcadd() failed; see warnings()
---
Backtrace:
    ▆
 1. ├─rpx::pxget(px1, "F063721.dat-mztab.txt")
 2. └─rpx::pxget(px1, "F063721.dat-mztab.txt")
 3.   └─rpx (local) .local(object, ...)
 4.     └─rpx:::pxget1(uris[i], cache)
 5.       ├─BiocFileCache::bfcadd(cache, url, url)
 6.       └─BiocFileCache::bfcadd(cache, url, url)
 7.         └─BiocFileCache:::.util_download(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'RforProteomics.Rmd' failed with diagnostics:
bfcadd() failed; see warnings()
--- failed re-building ‘RforProteomics.Rmd’

SUMMARY: processing the following file failed:
  ‘RforProteomics.Rmd’

Error: Vignette re-building failed.
Execution halted