| Back to Build/check report for BioC 3.22 experimental data |
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This page was generated on 2026-02-17 15:53 -0500 (Tue, 17 Feb 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" | 4890 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 27/435 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
| BioPlex 1.16.1 (landing page) Ludwig Geistlinger
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | skipped | ||||||||
|
To the developers/maintainers of the BioPlex package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: BioPlex |
| Version: 1.16.1 |
| Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data BioPlex |
| StartedAt: 2026-02-17 11:08:18 -0500 (Tue, 17 Feb 2026) |
| EndedAt: 2026-02-17 11:09:07 -0500 (Tue, 17 Feb 2026) |
| EllapsedTime: 49.3 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data BioPlex
###
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* checking for file ‘BioPlex/DESCRIPTION’ ... OK
* preparing ‘BioPlex’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘BasicChecks.Rmd’ using rmarkdown
Quitting from BasicChecks.Rmd:98-100 [bioplex293T]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! download failed; see warnings()
---
Backtrace:
▆
1. └─BioPlex::getBioPlex(cell.line = "293T", version = "3.0")
2. └─BioPlex:::.getResourceFromCache2(rname)
3. ├─BiocFileCache::bfcdownload(bfc, rid, ask = FALSE, ...)
4. └─BiocFileCache::bfcdownload(bfc, rid, ask = FALSE, ...)
5. └─BiocFileCache:::.util_download_and_rename(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'BasicChecks.Rmd' failed with diagnostics:
download failed; see warnings()
--- failed re-building ‘BasicChecks.Rmd’
--- re-building ‘BioPlex.Rmd’ using rmarkdown
Quitting from BioPlex.Rmd:117-121 [bioplex293T]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! download failed; see warnings()
---
Backtrace:
▆
1. └─BioPlex::getBioPlex(cell.line = "293T", version = "3.0")
2. └─BioPlex:::.getResourceFromCache2(rname)
3. ├─BiocFileCache::bfcdownload(bfc, rid, ask = FALSE, ...)
4. └─BiocFileCache::bfcdownload(bfc, rid, ask = FALSE, ...)
5. └─BiocFileCache:::.util_download_and_rename(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'BioPlex.Rmd' failed with diagnostics:
download failed; see warnings()
--- failed re-building ‘BioPlex.Rmd’
SUMMARY: processing the following files failed:
‘BasicChecks.Rmd’ ‘BioPlex.Rmd’
Error: Vignette re-building failed.
Execution halted